Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40740 166 / 7e-49 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT4G23810 98 / 5e-23 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT4G11070 97 / 5e-23 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT2G46400 94 / 1e-21 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT5G24110 91 / 1e-20 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT3G56400 87 / 4e-19 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 82 / 3e-17 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT1G66560 78 / 2e-16 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1) AT1G66550 78 / 2e-16 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2) AT2G37260 76 / 3e-15 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G059300 [exp] 412 / 9e-144 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2) Potri.012G031700 [exp] 107 / 5e-26 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.003G138600 [exp] 100 / 7e-24 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 100 / 1e-23 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.001G092900 [exp] 98 / 9e-23 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.002G168700 [exp] 97 / 2e-22 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.006G109100 [exp] 84 / 5e-18 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 76 / 5e-15 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.005G141400 [exp] 75 / 7e-15 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029022 [exp] 176 / 8e-53 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2) Lus10032372 [exp] 102 / 4e-24 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10023099 [exp] 102 / 5e-24 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10001062 [exp] 99 / 3e-23 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10039331 [exp] 99 / 6e-23 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2) Lus10001902 [exp] 98 / 7e-23 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10003894 [exp] 89 / 1e-19 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2) Lus10034245 [exp] 83 / 9e-18 AT2G40740 108 / 6e-28 WRKY DNA-binding protein 55 (.1.2) Lus10014177 [exp] 76 / 2e-15 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 76 / 5e-15 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G090400.1 pacid=42811114 polypeptide=Potri.013G090400.1.p locus=Potri.013G090400 ID=Potri.013G090400.1.v4.1 annot-version=v4.1 ATGTTCAAAAAACCTCGAAAACAACAAGAAACCAATATGGACGAGACCATTTCCTTGATCCTTCATGGGTGCAAGTTAGCTAAAGACCTTGAATTAAACC TAGCAAACCTAGCCAGCCAGCCAGAGATATTTTCCAGGTCATGTGAAGATATCATTAGGGTTTTTATTAATGCTAGGGAAAGGCTAAATGTTCATCAACA AGACACCACTTCATACACTCATCACATGTTGTTTCGCGAGCCACGGGAATTACAGCAACAACAGAATATTGATCCTAGCCTCCAGGAATGGCTAAGGACT AGTTGCCCATCAGCCATGGAGACGTTGTTTCATCAATCACAGGTCCTTGTTCCTGAGAAGACGCAAATGGGGTCAGGAGACTTTGTTATTGAATTAGGTA GTAGATCAGATCATGTTCAAGCAATAGATGCATCAGATCCTGGCAGAGGTTCTTCATCATCGTCACAAAGACCTCGAAGAAGGAAGGATGATGCCGAAAG ACGGACAGTGAGGGTTCCTGCTCAGCAGTTTGGCAATACTGAAATCCCACCAGAAGATGGCTTCACTTGGAGGAAATATGGACAGAAAGAGATACTCGGT TCAAGGTTCCCGAGGGCTTACTACAGGTGCACCCACCAGAAGCTGTACCATTGTCTAGCCAAGAAACAAGTTCAGCGACTTGATGACGATCCCTACACAT TCGAGGTGGCGTACCGTGGCGAGCACACTTGCCACATGTCTGCCACGGCACCATCAGTTCCACCAGCAGCAGCAGATATTGCACAAGAGATGGCCCAAAC TATGAGTGCTCAGCCTCAGCCATCTGCAGCAACTTCTCTCGCTAGATGGCTGGAATTTAGTCTGGGTTCTGGAGGTAGCGCTGGTTGCAGCAGTAGCAGC ATGGCTGCAGGTGCTGGTAGTAGTGGTGAAGGTCCCTCCACCGCTGGTCGATACAGTAAAGAAGCTGACTGCCCTATAATAGACATGGCTGATGCCATGT TTAATTCCGGCAGCAGTAGCACCAATAGCATGGAGTTTATTTTCCCTTCCATATTGGAAGAAAAATGGGATCAGGCAAGCGATAAAAAGCCTTGA
AA sequence Show only first row Show all	>Potri.013G090400.1 pacid=42811114 polypeptide=Potri.013G090400.1.p locus=Potri.013G090400 ID=Potri.013G090400.1.v4.1 annot-version=v4.1 MFKKPRKQQETNMDETISLILHGCKLAKDLELNLANLASQPEIFSRSCEDIIRVFINARERLNVHQQDTTSYTHHMLFREPRELQQQQNIDPSLQEWLRT SCPSAMETLFHQSQVLVPEKTQMGSGDFVIELGSRSDHVQAIDASDPGRGSSSSSQRPRRRKDDAERRTVRVPAQQFGNTEIPPEDGFTWRKYGQKEILG SRFPRAYYRCTHQKLYHCLAKKQVQRLDDDPYTFEVAYRGEHTCHMSATAPSVPPAAADIAQEMAQTMSAQPQPSAATSLARWLEFSLGSGGSAGCSSSS MAAGAGSSGEGPSTAGRYSKEADCPIIDMADAMFNSGSSSTNSMEFIFPSILEEKWDQASDKKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.013G090400 [exp]	0	1
AT5G24110	WRKY	ATWRKY30, WRKY3...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.012G031700 [exp]	1.00	0.9884
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.012G054900 [exp]	2.44	0.9879	CBP60.6
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.015G045300 [exp]	3.00	0.9855
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	7.07	0.9810
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	8.24	0.9824
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.006G071600 [exp]	8.24	0.9558
AT5G51160			Ankyrin repeat family protein ...		Potri.006G223800 [exp]	11.31	0.9576
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	12.00	0.9724
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	12.40	0.9790	Pt-AO1.3
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	14.42	0.9790

Compare expression of checked genes

Potri.013G090400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.