Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40730 1144 / 0 CTEXP cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) AT1G22870 73 / 7e-13 Protein kinase family protein with ARM repeat domain (.1) AT1G71410 72 / 1e-12 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G059200 [exp] 1368 / 0 AT2G40730 1172 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Potri.013G098700 [exp] 83 / 5e-16 AT1G71410 1177 / 0.0 ARM repeat superfamily protein (.1) Potri.005G162201 [exp] 46 / 6e-06 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029025 [exp] 1230 / 0 AT2G40730 1221 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Lus10034240 [exp] 1221 / 0 AT2G40730 1216 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G090500.4 pacid=42811376 polypeptide=Potri.013G090500.4.p locus=Potri.013G090500 ID=Potri.013G090500.4.v4.1 annot-version=v4.1 ATGCTGAGATTCTTAAAAGGAGTGGTGGGTGGATCTGGTACCGGACTGAAAGATCTCCCTTACAATATCGGCGATCCTTACCCTTCTGCTTGGGGATCCT GGACTCACCATCGCGGAACCTCCAAGGATGACGATGGTGGATCGGCGGTGTCCATATTTTCTCTTTCTGGAAGTAATGCACTGGATGGCCATTTAGCTGC TGGTCGTAATGGTGTCAAGCGTCTTCGTACTGTCAGACATCCAAATATCTTGTCATTTCTTCACAGTACTGAAGTTGAAAGTGTTGAAGGTTCTAGCTCA AGGGTTACTATATATATTGTAACAGAGCCTGTTATGCCACTATCTGAGAAGATCAAGGAACTAGGTTTAGAAGGCGCACAAAGGGATGAGTATTATGCCT GGGGGCTGAACCAGATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTGTACATGGTAATGTTTGCTTGGCCAGTGTTGTTGTTACACCAAC TTTAGATTGGAAGTTGCATGCTTTTGATGTTCTATCTGAGTTTGATGGAAGCAATGGGAATGCAACTGGACCAATGCTGCAATATGAATGGCTTATTGGA TCACAATATAAACCAATGGAGTTGGCTAAGTCTGATTGGGTTGCAATCAGAAAATCTCCACCTTGGGCCATTGATTCTTGGGGCTTAGGATGTCTTATAT ATGAACTCTTTTCTGGTATGAAGTTGGGCAAAACAGAAGAGCTGCGTAACACATCTTCCATTCCAAAGTCTTTACTTCAGGATTATCAGCGCCTGTTGAG TTCTATGCCCTCTCGCAGGATGAATACAGCAAAGCTCTTAGAAAATAGTGAATACTTCCAGAATAAGTTGGTGGACACCATACATTTTATGGAAATTCTT ACTTTAAAAGACAGTGTCGAGAAGGATACCTTCTTCCGCAAACTTCCAAATTTAGCAGAGCAACTTCCTCGCCCAATTGTGCTGAAAAAGTTACTTCCTT TATTAGCTTCTGCCCTTGAATTTGGTTCTGCTGCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCTTGGCTTTCATCTGAAGAATTTAGTGTCAA GGTGTTACCGACTATTGTGAAACTTTTTTCCTCCAATGATCGTGCTGTTCGTGTTAGTCTCCTGCAACATATTGATCAATATGGAGAGTCATTGTCAGCA CAAGTTGTTGATGAGCAAGTTTTCCCTCATGTTGCTACCGGGTTCTCTGATACATCTGCTTTTCTTCGTGAATTGACTCTTAAATCCATGCTGGTTTTGG CACCTAAGCTTTCTCAACGTACTATTTCGGGCTCCTTGCTGAAATATCTTTCGAAGTTACAGGTTGATGAAGAGCCTGCAATTAGAACAAATACCACCAT ATTACTTGGGAATATTGCAAGCTACTTGAATGAAGGGACAAGGAAGAGAGTTCTAATTAATGCTTTTACAGTTCGAGCACTGCGTGATACTTTTTCTCCT GCCAGAGGAGCAGGAGTAATGGCTTTGTGTGCCACTAGTTCTTATTATGACATTAACGAGATCGCAACTCGGATTCTTCCGAATGTTGTTGTACTTACTA TTGATCCTGACAGTGATGTTCGATCAAAATCTTTTCAAGCAGCTGAACAGTTTTTGCAAATAGTGAAGCAATACCATGAGACAAATGTTGGAGACGCAGC TGGAGCTGCAAGCACAGGAATCTCATCAATACCAGGAAATGCTAGTTTACTTGGATGGGCCATGAGCTCCTTGACTAGCAAAGGTAAACCTTCAGAACAA GCTCCACTTGCTCCTGCAAATTCTGGCGTTCCTCTATCTTCCACAACCTCCAATGCCAGCTCAGTGATGGACTCTCCGAGTATAGCACCAGCCCGGGTAA ATTCCAGCGGAGACTTGGCTGATCAACCTGTACCGGAGTCCCCTACTTCAACAGATGGCTGGGGAGAAATTGAAAATGGAATTCATGAAGAGCAGGGTAG TGTCAAAGATGGGTGGGATGATATTGAACCTCTTGAAGAGCCAAAGCCTTCTCCAGCTCTTGCAAGCATTCAAGCAGCTCAGAAGCGGCCTGTCTCACAG CCAGTTTCACAGCAAAAAGCACAAGCTGCAAGTGTGCGACCAAAAAGTACTGGGAGGGCGACAAAAGATGAAGATGATGATTTATGGGGTTCTATAGCTG CCCCTGCTCCAAAAACCAATAAAAAGCCTTTGAATGTCAAATCAGCTACAGCACTTGATGATGATGATCCCTGGGCTGCGATTGCTGCTCCCCCACCTAC TACAAGGGCCAAACCACTGGTGGCTGGTAGAGGCCGAGGTAAACCTGCTGCTCCAAAATTGGGCGCGCAAAGGATAAACCGGACGTCCTCATCTGGGATG TAA
AA sequence Show only first row Show all	>Potri.013G090500.4 pacid=42811376 polypeptide=Potri.013G090500.4.p locus=Potri.013G090500 ID=Potri.013G090500.4.v4.1 annot-version=v4.1 MLRFLKGVVGGSGTGLKDLPYNIGDPYPSAWGSWTHHRGTSKDDDGGSAVSIFSLSGSNALDGHLAAGRNGVKRLRTVRHPNILSFLHSTEVESVEGSSS RVTIYIVTEPVMPLSEKIKELGLEGAQRDEYYAWGLNQIAKAVSFLNNDCKLVHGNVCLASVVVTPTLDWKLHAFDVLSEFDGSNGNATGPMLQYEWLIG SQYKPMELAKSDWVAIRKSPPWAIDSWGLGCLIYELFSGMKLGKTEELRNTSSIPKSLLQDYQRLLSSMPSRRMNTAKLLENSEYFQNKLVDTIHFMEIL TLKDSVEKDTFFRKLPNLAEQLPRPIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSSEEFSVKVLPTIVKLFSSNDRAVRVSLLQHIDQYGESLSA QVVDEQVFPHVATGFSDTSAFLRELTLKSMLVLAPKLSQRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFSP ARGAGVMALCATSSYYDINEIATRILPNVVVLTIDPDSDVRSKSFQAAEQFLQIVKQYHETNVGDAAGAASTGISSIPGNASLLGWAMSSLTSKGKPSEQ APLAPANSGVPLSSTTSNASSVMDSPSIAPARVNSSGDLADQPVPESPTSTDGWGEIENGIHEEQGSVKDGWDDIEPLEEPKPSPALASIQAAQKRPVSQ PVSQQKAQAASVRPKSTGRATKDEDDDLWGSIAAPAPKTNKKPLNVKSATALDDDDPWAAIAAPPPTTRAKPLVAGRGRGKPAAPKLGAQRINRTSSSGM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	0	1
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	2.82	0.9503
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	3.46	0.9283
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.001G289500 [exp]	4.00	0.9457	TUA2.1
AT4G32120			Galactosyltransferase family p...		Potri.018G024500 [exp]	4.69	0.9293
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	6.00	0.9118
AT3G19460			Reticulon family protein (.1.2...		Potri.001G300400 [exp]	8.66	0.9268
AT3G27325			hydrolases, acting on ester bo...		Potri.001G338000 [exp]	8.94	0.9298
AT4G23460			Adaptin family protein (.1)		Potri.003G130400 [exp]	9.16	0.9411
AT1G73430			sec34-like family protein (.1....		Potri.010G138900 [exp]	9.27	0.9080
AT4G24840			unknown protein		Potri.015G094000 [exp]	9.79	0.9401

Compare expression of checked genes

Potri.013G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.