Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40720 912 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 466 / 4e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 437 / 1e-139 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 432 / 9e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 416 / 3e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 410 / 2e-130 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G63370 410 / 2e-129 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 408 / 1e-128 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 402 / 2e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 402 / 1e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 468 / 2e-149 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 454 / 3e-146 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 451 / 3e-144 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 448 / 3e-144 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 449 / 1e-143 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 442 / 4e-142 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 441 / 5e-141 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 444 / 7e-141 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 439 / 4e-139 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012873 [exp] 1026 / 0 AT2G40720 946 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030522 [exp] 606 / 0 AT2G40720 512 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 473 / 7e-154 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 461 / 7e-148 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 463 / 2e-145 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 451 / 9e-145 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 451 / 3e-144 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 440 / 4e-140 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 437 / 9e-139 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 431 / 3e-137 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G090600.5 pacid=42811456 polypeptide=Potri.013G090600.5.p locus=Potri.013G090600 ID=Potri.013G090600.5.v4.1 annot-version=v4.1 ATGCCCAAATCGAAAAACCAAAACCAGAATTTTAGATATCTCCCTCTTGTATTACTTACTGAACTAGTGTGTTTTGTGTTGGCCGACCATGCTGACATGT ATTTCATTCAACAAATTTCTCGCAAACTTTCAAATCTAGCACACTCAGATTTGATCGATCCCAAAATCGTAACTTTAGTTCAACAAGGACAATATGTAGA TGCCTTGCAATTCTACTCTAGAAATCCCCTAAACGCTACCAGGTTCACATACCCTTCTCTCCTAAAGGCCTGTGGTTTCCTTTCAAATCTTCAATATGGA AAAACAATTCATTCTACAATCATCACCAAAGGCTTCTTCTACTCTGATCCTTATATCACTACCTCACTTATCAATTTTTATTTTAAATGCGGGTCATTTG GAAATGCAGTTAAAGTGTTTGATAAATTGCCTGAGAGTGAAGTGTCAGGCCAAGATGTAACCTTTTGGAATTCTATAGTTAATGGGTACTTTCGATTTGG ACATAAAAAGGAGGGCATAGCTCAGTTTTGTAGAATGCAATTATTTGGTGTTAGGCCTGATGCTTACTCATTGTGTATTCTACTTGGTGCGTCTGATGGG CATTTGGGATATGCGAAGCAAATTCATGGTTATAGCGTTAGAAAAGTGTTTTACGGTGACCCTTTTTTGGAAAGTGGACTAATTTATATGTACTTTAGTT GCGGTAGACCTCTGGATGCGTGGCGTTTGTTCAAAGAGTTGGAAGATAAGGGCAATGTTGTAGCATGGAATGTGATGATTGGAGGATTTGGTGAGAATGG CTTGTGGGAAAATAGCTTGGAAGTATATTTGTTAGCGAAGAATGAAAATGTCAAACTTGTTTCAGCATCCTTTACTAGTACTCTAAGTGCTTGTTGTCAG GGTGAATTTGTTAGTTTTGGCATGCAGGTTCATTGTGATCTGGTTAAGCTGGGTTTTGAGAATGACCCTTATGTTTGTACTTCACTATTGACTATGTATT CCAAGTGCAAGTTGGTTGAAGATGCCGAAAATGTTTTTGATCAGGTTTCTGTGAAAAAGACTGAATTATGGAATGCAATGATCTCGGCATATGTTGGTAA TGGACGCTCTTATGATGGTTTGAAAATTTACAAACAGATGAAGGTACTTCAAATTCCACCTGATTCTCTTACAGCGACAAATGTTTTATCATCTTGCTGT TTGGTTGGTTCATATGATTTTGGTAGGTTGATTCATGCAGAATTAGTAAAAAGACCTATTCAAAGTAATGTTGCTCTACAGAGTGCTCTGTTGACCATGT ACTCAAAATGCGGTAACAGTGATGATGCTAATTCAATATTTAACACAATAAAAGGAAGGGACGTAGTTGCATGGGGTTCCATGATATCAGGTTTTTGCCA AAATAGGAAATACATGGAGGCTTTGGAATTTTACAACTCAATGACAGTATATGGGGAGAAACCAGATTCTGATATTATGGCAAGCGTTGTGAGTGCTTGT ACAGGACTAAAGAATGTCAATCTCGGTTGCACTATCCATGGACTTGCTATTAAAAGTGGGTTGGAACAGGATGTTTTCGTTGCAAGTTCCCTGGTGGATA TGTACTCCAAATTTAATTTCCCAAAGATGTCTGGAAATGTATTTTCTGATATGCCACTTAAGAACCTTGTAGCTTGGAATTCTATAATATCTTGCTATTG CAGGAATGGCCTCCCAGACTTGTCCATTAGTCTTTTTTCTCAAATGACACAGTACGGCTTGTTTCCAGATTCTGTCTCTATTACAAGTGTCCTTGTTTCT GTTTCGTCAGTTGCAGTACTACGTAAAGGAAAGGCAGTGCATGGGTATCTGATAAGACAGAGGATTCCATCTGACCTTCAACTAGAGAATGCTCTGATTG ATATGTATATCAAGTGTGGATTCTTGAAATATGCCCAGCATATCTTTCAAAACATGCTTCAGACAAACTTGGTGACTTGGAATATAATGATTGCTGGTTG TGGATCACATGGGGATTGGTTGAAAGCAATGAGATTATTTGATGAGATGAGAAGTTTTGGAATCGCTCCTGATGATATTACTTTCATTTCTCTTCTGACA TCTTGCAACCATTGTGGTTTCATTGAGGAAGGGCTAAAACTTTTTCAATTGATGACGGTGGAGCATGGGATTGAGCCAAGAATGGAGCATTATGTAAACA TTGTTGACCTCTTGGGCCGTGCAGGACGCCTGGATGATGCTTATGCTTTTGTGAAAAACTTGCCTATTGAACCTGACAGGAGTATTTGGCTATCTTTGTT ATGCTCATGCAGAGTCCATCATAATGTTGAGCTTGGTAAGCTGGCAGCTCATAAGCTATTGGATATCGAACCCAGTAGGGGCAGCAATTATGTTCAACTT TTGAATCTTTATGGAGAAAATGAATTGCAGGACAGGGCTGCAAACTTGCGGGCTTCAATGAAAGAAAAAGGCTTAAAGAAGACTCCTGGGTGCAGTTGGA TTGAAGTAGGGAATAGCATTGATGTTTTCTTCTCTGGTGATAGCTCATCTCCGAGGACAATAGAGATCTATGACTTATTGAATAGTCTTAGGAGGAACAT GCGAAAGAAAGGAGGTCATTATGAAAGTGTTGAGGCCTTGTAA
AA sequence Show only first row Show all	>Potri.013G090600.5 pacid=42811456 polypeptide=Potri.013G090600.5.p locus=Potri.013G090600 ID=Potri.013G090600.5.v4.1 annot-version=v4.1 MPKSKNQNQNFRYLPLVLLTELVCFVLADHADMYFIQQISRKLSNLAHSDLIDPKIVTLVQQGQYVDALQFYSRNPLNATRFTYPSLLKACGFLSNLQYG KTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDG HLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQ GEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCC LVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSAC TGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVS VSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMRLFDEMRSFGIAPDDITFISLLT SCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQL LNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGNSIDVFFSGDSSSPRTIEIYDLLNSLRRNMRKKGGHYESVEAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.013G090600 [exp]	0	1
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.006G032500 [exp]	2.44	0.8658
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	3.60	0.8706
					Potri.002G124250 [exp]	12.00	0.8220
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	13.22	0.8264
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	13.41	0.8366
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	14.89	0.8269	ENOD8.2
AT2G41020			WW domain-containing protein (...		Potri.006G032200 [exp]	18.76	0.7883
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.012G083800 [exp]	18.97	0.8244	Pt-HDA6.2,HDA909
AT1G71210			Pentatricopeptide repeat (PPR)...		Potri.004G229100 [exp]	19.97	0.8112
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.010G212100 [exp]	22.36	0.8238

Compare expression of checked genes

Potri.013G090600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.