Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AKIN10.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01090 728 / 0 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 701 / 0 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT5G39440 572 / 0 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT4G24400 268 / 1e-84 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT2G26980 265 / 3e-84 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G25110 268 / 7e-84 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G21326 263 / 2e-82 Ca2+regulated serine-threonine protein kinase family protein (.1) AT5G10930 260 / 3e-81 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT3G17510 255 / 2e-79 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT5G35410 253 / 1e-78 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087900 [exp] 773 / 0 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.004G115900 [exp] 766 / 0 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.001G222600 [exp] 263 / 3e-82 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G068400 [exp] 260 / 2e-81 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G263500 [exp] 259 / 5e-81 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.018G130500 [exp] 258 / 1e-80 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.010G002500 [exp] 257 / 4e-80 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.009G021000 [exp] 256 / 8e-80 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.014G104200 [exp] 252 / 2e-78 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001290 [exp] 758 / 0 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10035801 [exp] 747 / 0 AT3G01090 920 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10012696 [exp] 729 / 0 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10036582 [exp] 675 / 0 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10024448 [exp] 272 / 2e-85 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 268 / 4e-84 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10019411 [exp] 259 / 9e-81 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10030210 [exp] 249 / 6e-77 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10042229 [exp] 249 / 9e-77 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 248 / 1e-76 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.013G090800.2 pacid=42811635 polypeptide=Potri.013G090800.2.p locus=Potri.013G090800 ID=Potri.013G090800.2.v4.1 annot-version=v4.1 ATGGAAGGATCATCTCGTAGAAAACGCAGCCGTGTGGAGATGCTTTCACCAAATTACAAGCTTGGTAAAACTCTTGGATATGGCTCCTTTGGAGAGGTGA AGCTTGCTGAGCATAAATTGACAGGTCTTCATGTTGCCATCAAAATACTTAATCGCCATGAGATGAAAAAACAGGGGATGGAAGAAAAAGCGAGGAGAGA AATCAAAATCTTGAAAATGCTAATGCATCCTCATATTATACGACTGTATGAGGTTATTGAAACATCATCTGATATATTTGTTGTAATGGAGTATGCCAAG TGTGGGGAACTCTTTGAGTATATTTTGGAGAAGGGTAGGTTAGAAGAAGATGAGGCACGCAGTTTTTTCCAGCAGACAATTTCTGGTCTCGAATTTTGCC ACAGGAATATGGTTGTTCATAGAGACCTTAAGCCCGAGAATTTGCTGTTAGATTCTAAGCACAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAAT GCAAGATGGTCATTTTCTAAAGACAAATTGTGGAAGTTACAACTATGCTGCCCCAGAGGTCCTAGCTAGGAAATTGTATGCTGGGCCTGAAGTGGATATA TGGAGCTGTGGTGTTATATTGTATGCTCTTCTTTGTGGTTCACTACCATTTGATGATGAAAGCATTCCCAATCTCCTCAGGAAAATAAAGGGTGGCATAT ATTCTATTCCCCGATATTTGTCACCTGGTGCAACAGATATGATCTCAAAGATGCTTATGGTTGATCCAATGAGAAGAATGAACATGCCTGAAATTCGTCA GCACCCGTGGTTCCAAGCTCACCTTCCACGTTATTTGGCTGTTCCCCTGCCAGATACTATGCAATATGCTAAAAAGATTGATGTAGAGATTTTTCAGGAA GTGGTCAAGCTGGGATTTGATGGGAAACAACTAACCGAATCCATTATATGCAGAATGCAAAATGAGGCAAGCGTTGCATACCATTTGTTATTGGACCATC AATTCCGTGATTCTAATGGTTATCTTGGAGCTGAGATCCAAGAGACTACGGAAAGTAGTCTCAGTTCTATGCATCCAGATGAGCCTTCTTCATCAACAGG GCGCTTACTTCCAGGACATATTAATAATCAAGGATTGGCTTTACAGTTTCCGGGTAATAGGAAATGGGCTCTTGGACTTCAGTCTCGAGCTCATCCTCAT GAAATAATGATAGTAGTTCTCAGAGCTCTGCAAGAACTGACTGTGTGTTGGAAGAAAATTGGTGATTACAATATGAAGTGCAGGTGGATTCCTGGCACTC TTGAACCTCACAAAGGCAAAGCCATGGCAGTGAACGACCACCCTGTTCATAATTCTGATTTACTTGCGCAGCCCTCCATTGTTGAGAAAGATGCAATCAT GAACCCACCGAATGTGGTGAAGTTTGAAGTGCAGCTTTACAAATCTCACGAGGAAAAATACTTACTTGATCTACAAAGAGTCGAGGGTCCTCAGTTACTC TTCTTGGATCTTTGTGCAGCTTTCCTTGTACAGCTCAGAGTCCTTTAA
AA sequence Show only first row Show all	>Potri.013G090800.2 pacid=42811635 polypeptide=Potri.013G090800.2.p locus=Potri.013G090800 ID=Potri.013G090800.2.v4.1 annot-version=v4.1 MEGSSRRKRSRVEMLSPNYKLGKTLGYGSFGEVKLAEHKLTGLHVAIKILNRHEMKKQGMEEKARREIKILKMLMHPHIIRLYEVIETSSDIFVVMEYAK CGELFEYILEKGRLEEDEARSFFQQTISGLEFCHRNMVVHRDLKPENLLLDSKHNVKIADFGLSNIMQDGHFLKTNCGSYNYAAPEVLARKLYAGPEVDI WSCGVILYALLCGSLPFDDESIPNLLRKIKGGIYSIPRYLSPGATDMISKMLMVDPMRRMNMPEIRQHPWFQAHLPRYLAVPLPDTMQYAKKIDVEIFQE VVKLGFDGKQLTESIICRMQNEASVAYHLLLDHQFRDSNGYLGAEIQETTESSLSSMHPDEPSSSTGRLLPGHINNQGLALQFPGNRKWALGLQSRAHPH EIMIVVLRALQELTVCWKKIGDYNMKCRWIPGTLEPHKGKAMAVNDHPVHNSDLLAQPSIVEKDAIMNPPNVVKFEVQLYKSHEEKYLLDLQRVEGPQLL FLDLCAAFLVQLRVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.013G090800 [exp]	0	1	Pt-AKIN10.3
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.004G205500 [exp]	8.94	0.8742	Pt-NIN.1
AT1G31710			Copper amine oxidase family pr...		Potri.010G088800 [exp]	11.83	0.8501	DAO.2
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126001 [exp]	16.49	0.7930
AT2G45720			ARM repeat superfamily protein...		Potri.014G076500 [exp]	21.56	0.7523
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G045200 [exp]	28.63	0.8238
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176800 [exp]	33.86	0.7923	CHS.5
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.016G075800 [exp]	35.32	0.7938
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.004G055700 [exp]	35.79	0.7787
AT1G67550		URE	urease (.1)		Potri.008G177900 [exp]	38.36	0.7687
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126101 [exp]	40.21	0.7938

Compare expression of checked genes

Potri.013G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.