Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40690 612 / 0 SFD1, GLY1 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) AT5G40610 94 / 1e-20 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070900 [exp] 92 / 3e-20 AT5G40610 613 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029028 [exp] 590 / 0 AT2G40690 625 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10034238 [exp] 504 / 7e-177 AT2G40690 536 / 0.0 SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1, NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10022308 [exp] 94 / 1e-20 AT5G40610 607 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1) Lus10014889 [exp] 93 / 2e-20 AT5G40610 609 / 0.0 NAD-dependent glycerol-3-phosphate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02558 [poplar] [flax] ApbA Ketopantoate reductase PanE/ApbA CL0106 [poplar] [flax] 6PGD_C PF07479 [poplar] [flax] NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.013G090900.1 pacid=42811389 polypeptide=Potri.013G090900.1.p locus=Potri.013G090900 ID=Potri.013G090900.1.v4.1 annot-version=v4.1 ATGGCGGCGCTTCTTCTTGAATTACCTCCTCCTCCATTCTTGAACTGTAACCACCACCAATTTCTCTCCACCTCCAAAACTTCTCTAAGACTTCATAATT TCCCTTCCAAAACACCACCACCACCACCACCAACATTCACTCCCACTACCACATCTTGCTTTCTTTCAACTGTTACTTCTTCATCAATCTCAAAAGAAGA AAAAGAAAAAGAACCCCACTCCACTGCTGTAGCAAGTACCAAGGCTCCTGAGGAGGGGTCCCAGCAGGATCGCCGCAAAGTAGTTCAAATTGCTTGGGAG AAGCTCGTCCGTTGGTCCCGCTCCTGGCGCTCCAAGAACAACAAGACTGACCTTCTTGAACGCACTAACAAGGTGGTAGTGCTTGGTGGAGGATCTTTTG GTACAGCAATGGCTGCCCATGTTGCTTACAGAAAGTCTAGTTTGGAAGTTCAAATGCTTCTGCGTGACCCTTTACTCTGTCAGTCTATAAATGAAAATCA CTGTAATTGCAAGTACTTCCCGGAACATAAACTGCCCGATAATGTAATTGCCACCACCGATGCAAAAGCTGCTTTGCTTGATGCAGACTTTTGCCTTCAT GCTGTGCCTGTGCAGTTTAGTTCATCATTTCTTGAGGGCATTGCAGAATATGTTGATCCTGGCCTGCCTTTCATATCCCTCAGTAAAGGCTTAGAACTTA ATACATTGAGGATGATGTCTCAGATTATTCCCCAAGCATTGGGGAATCCTTACCAACCTTTTGTTTTGTTATCCGGGCCTTCTTTTGCTCTGGAATTGAT GAACAAGTTACCGACAGCAATGGTGGTGGCATCAAAGGACAAGAAATTGGCACATGCTGCTCAGCAGCTATTAGCTTCATCTCACTTGAGAATCAGCACT TCAAGGGATGTTACAGGGGTAGAAATTGCAGGGGCACTAAAAAATGTACTTGCCATAGCCGCTGGAATTGTTGAAGGAATGAATCTTGGCAATAACTCTA TGGCAGCTCTTGTTGCACAAGGTTGTTCAGAGATCCGATGGCTAGCTACAAAGATGGGTGCCAAACCTTCAACAATTACTGGTCTGTCAGGAACAGGAGA CATTATGCTTACTTGCTTTGTCAATCTCTCAAGAAACAGAACAGTTGGAGTACGGCTTGGATCTGGGGAGAAGCTTGATGATATACTGAGTTCTATGAAT CAGGTGGCAGAAGGCGTGTCAACAGCTGGAGCAGTGATTGCATTGGCCCAGAAATATAATGTTAAGATGCCAGTATTAACAGCAGTGGCTCGGATCATAG ATAATGAATTGACTCCGAAGAAAGCTGTTCTTGAGTTGATGAATCTCCCTCAGGTTGAGGAAGTTTGA
AA sequence Show only first row Show all	>Potri.013G090900.1 pacid=42811389 polypeptide=Potri.013G090900.1.p locus=Potri.013G090900 ID=Potri.013G090900.1.v4.1 annot-version=v4.1 MAALLLELPPPPFLNCNHHQFLSTSKTSLRLHNFPSKTPPPPPPTFTPTTTSCFLSTVTSSSISKEEKEKEPHSTAVASTKAPEEGSQQDRRKVVQIAWE KLVRWSRSWRSKNNKTDLLERTNKVVVLGGGSFGTAMAAHVAYRKSSLEVQMLLRDPLLCQSINENHCNCKYFPEHKLPDNVIATTDAKAALLDADFCLH AVPVQFSSSFLEGIAEYVDPGLPFISLSKGLELNTLRMMSQIIPQALGNPYQPFVLLSGPSFALELMNKLPTAMVVASKDKKLAHAAQQLLASSHLRIST SRDVTGVEIAGALKNVLAIAAGIVEGMNLGNNSMAALVAQGCSEIRWLATKMGAKPSTITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGEKLDDILSSMN QVAEGVSTAGAVIALAQKYNVKMPVLTAVARIIDNELTPKKAVLELMNLPQVEEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Potri.013G090900 [exp]	0	1
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	2.64	0.9828
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	2.82	0.9796
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	2.82	0.9800
AT2G31040			ATP synthase protein I -relate...		Potri.014G142200 [exp]	4.24	0.9786
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	4.24	0.9733
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	4.89	0.9798
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Potri.014G160600 [exp]	7.74	0.9788
AT4G33480			unknown protein		Potri.007G099900 [exp]	8.12	0.9551
AT5G07670			RNI-like superfamily protein (...		Potri.001G125800 [exp]	8.48	0.9623
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	8.77	0.9712

Compare expression of checked genes

Potri.013G090900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.