Plant FIBer expression Database

Potri.013G091100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05240 259 / 3e-80 Uncharacterised conserved protein (UCP030365) (.1)
AT2G40630 215 / 2e-63 Uncharacterised conserved protein (UCP030365) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G058200
[exp]
414 / 8e-140 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1)
Potri.013G157700
[exp]
84 / 3e-17 AT5G05240 103 / 8e-24 Uncharacterised conserved protein (UCP030365) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030527
[exp]
228 / 2e-70 AT2G40630 169 / 6e-48 Uncharacterised conserved protein (UCP030365) (.1)
Lus10029030
[exp]
225 / 6e-67 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1)
Lus10034236
[exp]
223 / 5e-66 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1)
PFAM info
Representative CDS sequence
>Potri.013G091100.2 pacid=42811263 polypeptide=Potri.013G091100.2.p locus=Potri.013G091100 ID=Potri.013G091100.2.v4.1 annot-version=v4.1
ATGCCTATTGAACTTCCGACTCAAACATATGTTAAAGCCCTATCTTCCGTACTTTATAATGCCACCGAAGCAAGCTCCAGTCACTTGAAAAACAAAGAAG
ACAGTAACCACTTTCAGCTTAGTGAACAGATGTCCCAAGTTACCAATGTGCCAATAACCTTGGACCTCAATGCTTATCAAGCAGAAAGACGTGGAAGGAC
CACATTATCAGTTGAGGTCACTGCTTCTTCTAGGCCACTGGATCTTAATAGTGAAGCTTGCATTGCTAATAATTTGGTGAGAAATGATATTGCAGAACAC
GCTGATAATTGTAATGAAGTCCCATTGCTCAAGAAGCATGAGGACAAACATGGCAATAAATGTGTAACCTCTGTTGGCATTGGTTTGGATCTGAATGCAG
AGGATGATAGCTCTGTGAACCAGGAGCTGTTCCGAACTAACAAGGATCATGATAAGTCAAGGGATGTTTCTGAGTGTGGCAGTGCTACTGGTCCAGTGCA
GGAAAAAGATCCATTAAGAATGTGGAAGGAGATGAAGCAAAATGGTTTCCTCTCATCTTCACATGGAGGGATTTCAATTCAAAGTGGTTTTATGTCATCT
TCTCATGGAGGGATACCAATGCCAAAGCAATGTGGGAGGAAACCCAAAGATGACGTTCACAAGAAAAAGATGGAACTTGCAAAGAGAGAGCAGGTTGATA
GGCTTACAAAGATTGCTGCTCCAAGTGGACTGCTAAATGGCTCGAACCTTGGGATCATAAACCATGTGAGAAACAAAAAGCAGGTCCATTCCATAATAGA
GGCCTTGGGTGATTTCAACATAGTAGGCACAGTACATGCCAGAAATTTCGTTTCATACTCCGCTGTCAGCAAAGATGATGTATTGGCATTGAAGTTGTCT
TCATCAACTAATGCCTTGGAGGAGTCTAGAACGGTTCTGAATGAGGAATCAGCAAACAGCACCAGTGTTTCTTGTCTTTCTGTGAGAGCGGCTTCAGTCT
CTTCTCAATGGTTGGAACTCCTTCATCAAGACATTAAAGGACGAATAGCAGCATTGTGCCGAAGCAGGAAGAGAGTCCGAGCTGTGATTACTACCGAGTT
ACATTTTTTATCAAAAGAGTTCTCGGCTATTGAAGTGGACAGTTCTTATATTATGCAAAGTTCTTCAGAAGTAGTGTCCAATAATACAACAGCTGCCCTG
CATCAAGCGAGATGGAGACCATTGTTTGATCAGTTGGATAAAGCACTTTATGAAGAAGAGAAACAACTTGAAAGATGGTTGTGCCAAGTAAAAGAAATGC
AAGTGCACTTTGATCAGGGACTGCAACATTTGAGCTATAAAGCAATTCTAGGTTACCCCAGGACTGAGAAAGCTGATAGCTTGCAGAAGGAATTGGCTGT
CAGAGCTGCTGCAGCTTCCATCTATTCAACATGCAATTTCCTGACTTCAAAGGAGAACGTATCTTGTTTCTGA
AA sequence
>Potri.013G091100.2 pacid=42811263 polypeptide=Potri.013G091100.2.p locus=Potri.013G091100 ID=Potri.013G091100.2.v4.1 annot-version=v4.1
MPIELPTQTYVKALSSVLYNATEASSSHLKNKEDSNHFQLSEQMSQVTNVPITLDLNAYQAERRGRTTLSVEVTASSRPLDLNSEACIANNLVRNDIAEH
ADNCNEVPLLKKHEDKHGNKCVTSVGIGLDLNAEDDSSVNQELFRTNKDHDKSRDVSECGSATGPVQEKDPLRMWKEMKQNGFLSSSHGGISIQSGFMSS
SHGGIPMPKQCGRKPKDDVHKKKMELAKREQVDRLTKIAAPSGLLNGSNLGIINHVRNKKQVHSIIEALGDFNIVGTVHARNFVSYSAVSKDDVLALKLS
SSTNALEESRTVLNEESANSTSVSCLSVRAASVSSQWLELLHQDIKGRIAALCRSRKRVRAVITTELHFLSKEFSAIEVDSSYIMQSSSEVVSNNTTAAL
HQARWRPLFDQLDKALYEEEKQLERWLCQVKEMQVHFDQGLQHLSYKAILGYPRTEKADSLQKELAVRAAAASIYSTCNFLTSKENVSCF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05240 Uncharacterised conserved prot... Potri.013G091100
[exp]
0 1
AT1G50240 FU FUSED, Protein kinase family p... Potri.019G052500
[exp]
1.73 0.9480
AT1G13170 ORP1D OSBP(oxysterol binding protein... Potri.008G182766
[exp]
2.44 0.9110
AT5G66840 SAP domain-containing protein ... Potri.003G069700
[exp]
6.92 0.9100
AT1G73240 unknown protein Potri.003G213050
[exp]
8.36 0.8907
AT4G38760 Protein of unknown function (D... Potri.004G168700
[exp]
9.94 0.8656
AT3G50120 Plant protein of unknown funct... Potri.016G039733
[exp]
11.09 0.8581
AT5G18700 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013,... Potri.010G031800
[exp]
11.83 0.8859
AT5G66750 CHR01, CHA1, SO... SOMNIFEROUS 1, DECREASED DNA M... Potri.019G129740
[exp]
12.00 0.8988
AT3G07330 ATCSLC6, ATCSLC... CELLULOSE-SYNTHASE LIKE C6, Ce... Potri.014G190701
[exp]
12.48 0.8851
AT5G26830 Threonyl-tRNA synthetase (.1) Potri.010G096500
[exp]
14.07 0.8914 Pt-THRRS.2

Potri.013G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.