Plant FIBer expression Database

Potri.013G091800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54190 723 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
AT2G38630 708 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G091700
[exp]
855 / 0 AT3G54190 764 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.019G064100
[exp]
815 / 0 AT3G54190 812 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.016G142600
[exp]
735 / 0 AT3G54190 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.006G113000
[exp]
719 / 0 AT3G54190 814 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.013G091600
[exp]
372 / 1e-129 AT3G54190 338 / 8e-116 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035613
[exp]
640 / 0 AT3G54190 754 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Lus10003237
[exp]
629 / 0 AT3G54190 751 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.013G091800.1 pacid=42812254 polypeptide=Potri.013G091800.1.p locus=Potri.013G091800 ID=Potri.013G091800.1.v4.1 annot-version=v4.1
ATGACTGATGCCCAAGAACGTTTTAGAAACATCCGGTTACAGGAGGAATATGATACTCATGATCCAAAAGGTCACTGTACCATGGTACTGCCATTTTTAA
GAAAGAGATCAAAGATTATTGAGATCGTAGCAGCTCGTGACATGGTGTTTGCTCTTGCACAGTCTGGTGTCTGTGCAGCATTTAGCCGAGAGACCAACCA
AAGGATATGCTTTTTGAATGTCACTCCTGATGAAGTTATACGAAGCTTGTTTTATAATAAAAACAATGATTCACTCATCACAGTTTCAGTTTATGCCTCA
GACAATTTCAGTTCCTTGAAATGTAGAAGCACAAGGATTGAATACATACAAAGGGGTCAGCCAGATGCTGGCTTTGCTCTTTTTGAGTCTGAGTCACTGA
AATGGCCTGGTTTTGTAGAGTTTGATGATGTAAACAGTAAAGTACTTACATATTCTGCACAGGATAGTATATACAAGGTGTTTGACCTAAAAAATTACAC
AATGTTATACTCAATAGCAAACAAAAATGTTCAAGAGATTAAGATCAGTCAAGGGATCATGTTGTTGATTTTAACTAAAAGTGGTGGCTATGTTCCTCTT
GAGATTCTTTCGATAGAGGATGGCACTGTTCTCAAATCTTTCAATCATCTCCTTCATCGGAATAAGAAGGTGGATTTCATTGAACAGTTCAATGAGAAGC
TTCTTGTCAAGCAAGAAAATGAAAATCTCCAGATTCTTGATGTCCGCGACTTTCAGCTAATAGAAGTTAGCAGAACTGAGTTTATGACACCATCAGCATT
TATATTTCTCTATGAAAACCAGCTATTCCTGACATTTAGAAATCGAACTGTGGCTGTTTGGAACTTCCGAGGAGAGCTTGTAACTTCTTTTGAGGATCAC
CTTTTGTGGCATCCTGATTGCAATACTAATAATATTTACATCACAAGTGATCAGGATCTTATAATTTCTTACTGCAAGGCTGATTCTGACGATCCCTTGT
CTGAAGGCAATGGATCCATCAATATCAGCAATATCTTGACTGGGAAATGTCTTGCTAAAATAAAGGCAGGCAACAGCTTCCCAAATGAGAATGAATGCAG
TCAGAGTTCAAAGAAGCACATGTGTGCCTCCACAGTGAGAAGCACAGCCGCAGAAGCTTTGGAAGACATCACTGCTCTCTTCTATGATGAAGAGCGCAAT
GAGATCTATACAGGCAATAGGCTTGGTCTAGTTCATGTGTGGTCTAACTGA
AA sequence
>Potri.013G091800.1 pacid=42812254 polypeptide=Potri.013G091800.1.p locus=Potri.013G091800 ID=Potri.013G091800.1.v4.1 annot-version=v4.1
MTDAQERFRNIRLQEEYDTHDPKGHCTMVLPFLRKRSKIIEIVAARDMVFALAQSGVCAAFSRETNQRICFLNVTPDEVIRSLFYNKNNDSLITVSVYAS
DNFSSLKCRSTRIEYIQRGQPDAGFALFESESLKWPGFVEFDDVNSKVLTYSAQDSIYKVFDLKNYTMLYSIANKNVQEIKISQGIMLLILTKSGGYVPL
EILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRDFQLIEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDH
LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLSEGNGSINISNILTGKCLAKIKAGNSFPNENECSQSSKKHMCASTVRSTAAEALEDITALFYDEERN
EIYTGNRLGLVHVWSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G54190 Transducin/WD40 repeat-like su... Potri.013G091800
[exp]
0 1
AT3G54190 Transducin/WD40 repeat-like su... Potri.013G091700
[exp]
1.73 0.7444
AT3G28360 ABCB16, PGP16 ATP-binding cassette B16, P-gl... Potri.001G417801
[exp]
5.83 0.7551
AT4G05320 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6... Potri.007G123300
[exp]
7.93 0.7208
Potri.001G152550
[exp]
9.59 0.7419
AT4G10500 2-oxoglutarate (2OG) and Fe(II... Potri.011G150200
[exp]
15.81 0.7113
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Potri.004G127200
[exp]
17.32 0.7366
AT4G02485 2-oxoglutarate (2OG) and Fe(II... Potri.014G131200
[exp]
18.43 0.6873
AT2G16370 THY-1 thymidylate synthase 1 (.1) Potri.005G230700
[exp]
24.49 0.7123 DHFR-TS-3b
AT1G06050 Protein of unknown function (D... Potri.017G027700
[exp]
29.29 0.6609
AT5G10980 Histone superfamily protein (.... Potri.007G014300
[exp]
31.17 0.6913

Potri.013G091800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.