Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33420 798 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 255 / 3e-75 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 251 / 3e-73 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 180 / 8e-48 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 91 / 8e-21 transcription factor-related (.1) ATMG00550 66 / 1e-12 ATMG00550.1, ORF160 unknown protein AT1G32810 60 / 6e-09 RING/FYVE/PHD zinc finger superfamily protein (.2) AT4G10600 52 / 3e-07 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134700 [exp] 741 / 0 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 721 / 0 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 706 / 0 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 304 / 4e-93 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 286 / 5e-87 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 265 / 1e-78 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G152600 [exp] 59 / 1e-08 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.001G448900 [exp] 56 / 1e-07 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T012300 [exp] 44 / 0.0003 AT5G23610 257 / 2e-79 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039160 [exp] 870 / 0 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 728 / 0 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 265 / 2e-78 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 264 / 5e-78 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 248 / 3e-72 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 242 / 6e-70 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 61 / 4e-09 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.013G092000.1 pacid=42812702 polypeptide=Potri.013G092000.1.p locus=Potri.013G092000 ID=Potri.013G092000.1.v4.1 annot-version=v4.1 ATGAAGCGAGCCAGGAGAAATAACAGGGTTACTGCAAATCTCTACGACATCCTCTCTTTTCCGTCTGCCGACGACTCCGTCTCCCCCGCTGTTCCCTTCA GGGACAACATCAAGGCGTTTTTGTCACGTCACGCGCGGGTCACCTTCCCACCTTCACTGTTTCCCTCCTTGTTGACGTGGCAGATCTTGTTTCGCATAGG AGATCTGGTGCTCGACGGTCCGGATATCTCATCGGTCGTTCTGGCTCTCGATATTGTTGAGGAGGACGTTACCAGATCTTCTAGATCCGTGTATTGCAAC CAGTGCCGAGTCGTTGGCTGGGGTGGACATCCCGTTTGCAAGAAACGGTACCATTTTATCATAAGAGCTAACAACAGCAGCCCTGCTGATGGATATCAGA GATCATGCAACAGATGCGGCAATCGGTGGTCGCACATATCGTCAGAATCCAGGTGCAAGGGGTGTGACACCGTGATTACCACAGATGATATTGAAGATTG GGTGTATTCTCAGTTCGAAGATAACACTCATCTACTTCACGGGGTTGTTCACTCCAATGGATTTGGCCACCTGCTTTTGGTTAATGGAAGGGAAGGTGGT TCCAGTGTTTTGACTGGTTCTGATATCATGAACTTTTGGGATAGGCTGTGCGAGACTCTGGCAGTAAGGAAGATATCCGTCATGGATGTGTCAAGAAAAT ATGGGATGGAGTACCGATTGCTCAATGCAATCACCAAGGGTCATTCATGGTATGGTGGTTGGGGTTATGAATTTGGATGTGGAAGCTTTGCAATAACATT GGATGCTTACAAGAAAGCAGTGGAAAGCATATCAAGTGTGCCCTTAGCCCCCCTATTATTCCGGTGGCGAGGACCACAAACTAGGCTACAAGCTCTAATT TCATTTTACCGATCACTGTCAGACTCGGAGCTTGTTACTATAAAGGACCTTTTCTCCTTTTTGTCTAGTCTGATCCATGCAAGCAATGAGTCATTAGCAT CCAAGGCAACACTCAAGAACTTAAAACCTGCTGCAAATATATTGTGTGCGTGGACAAGGGATGATGTAGAACGTGTACAACAAGCAATGATCAAGGTACT GGCTGCGGCATCTGGCAAGACCAATTGGGTTACAAGGCATGCTCTTAAAGGTGTCATGTGTAAAACAGCATCTCCAGAGCTTCTTGATTACTGCCTTAAA CACTTGGGAGGGAAGTTGGCAGCTAGCGGCACAATGGTTTGGGCACGATGCAATCCTAATTCCTTTGATATTGAATTCAGGCTAGAACCACCGAGTTTCA AACACAATGGAAATGGGCTCGACTCAAATCAGCCATCAAAAGAACATATCATAGGTGATCTGAAATTTTTATTTGATTCCCTGGTTCACCCCGAAACCAT GGTAAACTATAGACCTCTAGTGACTAGGGAAGATGTGATTGACTCAGCAACCAAGCTTCTCGACTGCAAACAATTCGTGAAGGACTACTGTAGACCAGAT AAGCGGATGGTTGATAACCCTTTTGCCATTCAGCTTTGGTGCTATGTAGAGTTTTCAGAGCATCTAAAAGAAGACCCAACTATACCGCCAGAGTTAATTG TCCTCCCTTCAAATGCCACTGTTGCTGACCTAAAAACTGAAGCCACCAAAGCTTTTCAACAAGTATATGCCATGCTTAAGAGATTCGAAGCTCGTGAATT GGTAGACTATGGGCCTCTTGAGGATTCCATTACTATTAAGTTTCTGGTTGGACAAAGTGGAACTGTCCGAATTAAAGGGACATGCCCATCAAAATATGCA CTTAGCCATTTCCGAATGGAGAAGGGACAGGAGAATTGGATAGTGGATTGCATGTGTGGAGCTAAGGATGATGATGGTGAGAGGATGTTAGCTTGTGATA CCTGCGGTGTTTGGCAGCATACTAGGTGCGCTGGGATTGACAATTGTGATGAAATTCCTGAAAAGTTTGAGTGCATGAGATGTATCAACTCATACCTCAA TAAATCTGAGAGGCATCTAAAAGAATTTTTCAATCCAAAACATCTACAAGCAGGGATGGGGCTGGAACCGATGGTGTCAGTGTCAGATCTGGACCACCTA TGA
AA sequence Show only first row Show all	>Potri.013G092000.1 pacid=42812702 polypeptide=Potri.013G092000.1.p locus=Potri.013G092000 ID=Potri.013G092000.1.v4.1 annot-version=v4.1 MKRARRNNRVTANLYDILSFPSADDSVSPAVPFRDNIKAFLSRHARVTFPPSLFPSLLTWQILFRIGDLVLDGPDISSVVLALDIVEEDVTRSSRSVYCN QCRVVGWGGHPVCKKRYHFIIRANNSSPADGYQRSCNRCGNRWSHISSESRCKGCDTVITTDDIEDWVYSQFEDNTHLLHGVVHSNGFGHLLLVNGREGG SSVLTGSDIMNFWDRLCETLAVRKISVMDVSRKYGMEYRLLNAITKGHSWYGGWGYEFGCGSFAITLDAYKKAVESISSVPLAPLLFRWRGPQTRLQALI SFYRSLSDSELVTIKDLFSFLSSLIHASNESLASKATLKNLKPAANILCAWTRDDVERVQQAMIKVLAAASGKTNWVTRHALKGVMCKTASPELLDYCLK HLGGKLAASGTMVWARCNPNSFDIEFRLEPPSFKHNGNGLDSNQPSKEHIIGDLKFLFDSLVHPETMVNYRPLVTREDVIDSATKLLDCKQFVKDYCRPD KRMVDNPFAIQLWCYVEFSEHLKEDPTIPPELIVLPSNATVADLKTEATKAFQQVYAMLKRFEARELVDYGPLEDSITIKFLVGQSGTVRIKGTCPSKYA LSHFRMEKGQENWIVDCMCGAKDDDGERMLACDTCGVWQHTRCAGIDNCDEIPEKFECMRCINSYLNKSERHLKEFFNPKHLQAGMGLEPMVSVSDLDHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	0	1
AT1G35660			unknown protein		Potri.019G083100 [exp]	1.00	0.9348
					Potri.004G234200 [exp]	1.41	0.9118
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	2.00	0.9024
AT2G01480			O-fucosyltransferase family pr...		Potri.008G130600 [exp]	3.16	0.8797
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.001G473100 [exp]	6.70	0.8833	PEX5.2
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Potri.011G102100 [exp]	8.48	0.8460
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075900 [exp]	9.16	0.8867
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.019G072300 [exp]	9.74	0.9022	Pt-SGR2.2
AT1G05120			Helicase protein with RING/U-b...		Potri.014G154600 [exp]	9.89	0.8392
AT2G34930			disease resistance family prot...		Potri.015G024500 [exp]	10.95	0.8771

Compare expression of checked genes

Potri.013G092000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.