Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19770 65 / 8e-13 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) AT5G09320 49 / 3e-07 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G066200 [exp] 145 / 8e-43 AT3G19770 338 / 4e-112 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Potri.005G171500 [exp] 46 / 3e-06 AT3G19770 536 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Potri.018G120700 [exp] 40 / 0.0004 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.018G118035 [exp] 39 / 0.0005 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030981 [exp] 48 / 6e-07 AT3G19770 516 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Lus10035376 [exp] 46 / 2e-06 AT3G19770 572 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G092100.4 pacid=42811383 polypeptide=Potri.013G092100.4.p locus=Potri.013G092100 ID=Potri.013G092100.4.v4.1 annot-version=v4.1 ATGCAAATCTCTATATCTTCTCCTCTCTTTCTTTCCTCACTTTTCTTTTGTCAAAATGTTGGCTTCGCTTGGTTGTCCAATTCTGTGGTGAGGGTATGCT CAAATGGAAATATATGCCAGTATCTTGTTAACTGTGTTCTTGAATCAGCTTATTATTTCACAAATCTTGTTTCATCTAAGTCCTTTATTGTCGAGTTAAA TGCCAAATCTCTTTCTTTGGATGTAATTGAATTTGAAGAGAGTATGCGAGCAGCTAGGTTGGACAGCAAGGTATCACAAGTACAAGCTTTACGAGCACAG ACAGGTCATGGTCCCCCAACAAGAATGTGTTGCGTGGAAACAAATATAGATGGCAGATCAAATTATCCATACATGGAAGCTGAACCTGGTGAATTGACAG TTGAAGATGTGGAAAGATTTCTGAGTGGTACAAAGATGTAG
AA sequence Show only first row Show all	>Potri.013G092100.4 pacid=42811383 polypeptide=Potri.013G092100.4.p locus=Potri.013G092100 ID=Potri.013G092100.4.v4.1 annot-version=v4.1 MQISISSPLFLSSLFFCQNVGFAWLSNSVVRVCSNGNICQYLVNCVLESAYYFTNLVSSKSFIVELNAKSLSLDVIEFEESMRAARLDSKVSQVQALRAQ TGHGPPTRMCCVETNIDGRSNYPYMEAEPGELTVEDVERFLSGTKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092100 [exp]	0	1
AT2G39580			unknown protein		Potri.010G208200 [exp]	1.41	0.8643
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.014G090601 [exp]	3.74	0.7977
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.008G101800 [exp]	3.87	0.8295
AT5G16610			unknown protein		Potri.017G130400 [exp]	5.38	0.7695
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103132 [exp]	5.47	0.7973
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053332 [exp]	6.00	0.8134
AT5G15270			RNA-binding KH domain-containi...		Potri.008G088600 [exp]	6.92	0.8112
AT3G50430			unknown protein		Potri.005G133500 [exp]	7.74	0.8238
AT5G24970			Protein kinase superfamily pro...		Potri.018G014000 [exp]	9.94	0.7641
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063201 [exp]	14.42	0.7969

Compare expression of checked genes

Potri.013G092100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.