Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19770 119 / 2e-31 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) AT5G09320 108 / 3e-27 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G066200 [exp] 210 / 5e-67 AT3G19770 338 / 4e-112 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Potri.005G171500 [exp] 135 / 3e-37 AT3G19770 536 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035376 [exp] 123 / 6e-33 AT3G19770 572 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Lus10030981 [exp] 102 / 3e-25 AT3G19770 516 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G092250.1 pacid=42812430 polypeptide=Potri.013G092250.1.p locus=Potri.013G092250 ID=Potri.013G092250.1.v4.1 annot-version=v4.1 ATGGACACTGCAGCGAGTCAATCACCATCGTCTCCATCAATTATGTTTTATGATTTTCTTTATAAAATGCGAAACCCTGCTTCACTCAATCTTGTCAAGT CTATTAAAAGCTTCATTGTATCATTCCTATTTTCGTATGCCAGCCCTGAAAACAATAGCAAAAAGGTACAAGAGTTTTTCTGGACAATGGAAGCAGCTAT CATTGAACATCCTGTTGATGAGAATAACACCCTTTCCTTCCCATATCTTTCTGTTGTTTGCCCTCCCAAGCTTCTACTGATTCAAGCATACAACCCTTGC CATCTGCTAGTAAGTATGATGGATTGCGTACCCTTGCTGCTTGAAGCTCTAAGCCAACTTAAGTTCATCGAGGTCATCGATTTGGAGATTGACCAAGAGA TCTCAGAGATGATACACTTTTTGCAATCCTTTTTGCGGTCTGAGCATTTGGATATTCCTGCATTTCTTCAGAATGAAGCTTCATGGCTGCTTGCAGAAAA GGAATTGCAGAAGATCAACGCTTTTGAAGCTCGGGAGAAGCTTCTCTGTATTATGAGTTGTTGCATGATCATCAACAATTTGCTGCTCAATTCAACAATG TGA
AA sequence Show only first row Show all	>Potri.013G092250.1 pacid=42812430 polypeptide=Potri.013G092250.1.p locus=Potri.013G092250 ID=Potri.013G092250.1.v4.1 annot-version=v4.1 MDTAASQSPSSPSIMFYDFLYKMRNPASLNLVKSIKSFIVSFLFSYASPENNSKKVQEFFWTMEAAIIEHPVDENNTLSFPYLSVVCPPKLLLIQAYNPC HLLVSMMDCVPLLLEALSQLKFIEVIDLEIDQEISEMIHFLQSFLRSEHLDIPAFLQNEASWLLAEKELQKINAFEAREKLLCIMSCCMIINNLLLNSTM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092250 [exp]	0	1
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284301 [exp]	12.96	0.7385
AT5G25560			CHY-type/CTCHY-type/RING-type ...		Potri.006G245400 [exp]	16.49	0.7163
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.003G137100 [exp]	20.49	0.7335
AT4G33640			unknown protein		Potri.017G042432 [exp]	20.78	0.7199
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Potri.017G065900 [exp]	21.16	0.7369
AT5G36930			Disease resistance protein (TI...		Potri.011G012750 [exp]	24.59	0.7413
AT1G68890			magnesium ion binding;thiamin ...		Potri.010G135500 [exp]	27.65	0.7216
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	30.03	0.7120	UBP25.1
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	31.17	0.7346
AT3G50380			Protein of unknown function (D...		Potri.007G034900 [exp]	35.77	0.7353

Compare expression of checked genes

Potri.013G092250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.