Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40600 310 / 1e-107 appr-1-p processing enzyme family protein (.1) AT1G69340 87 / 1e-19 appr-1-p processing enzyme family protein (.1) AT5G01310 42 / 0.0002 bHLH APTX, bHLH140 APRATAXIN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161500 [exp] 86 / 2e-19 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 86 / 2e-19 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034226 [exp] 311 / 3e-109 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Lus10029039 [exp] 309 / 3e-108 AT2G40600 310 / 3e-108 appr-1-p processing enzyme family protein (.1) Lus10034225 [exp] 286 / 2e-99 AT2G40600 286 / 1e-98 appr-1-p processing enzyme family protein (.1) Lus10029040 [exp] 175 / 3e-56 AT2G40600 184 / 2e-59 appr-1-p processing enzyme family protein (.1) Lus10030413 [exp] 86 / 2e-19 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 85 / 6e-19 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 85 / 6e-19 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [poplar] [flax] MACRO PF01661 [poplar] [flax] Macro Macro domain
Representative CDS sequence Show only first row Show all	>Potri.013G092700.4 pacid=42811084 polypeptide=Potri.013G092700.4.p locus=Potri.013G092700 ID=Potri.013G092700.4.v4.1 annot-version=v4.1 ATGGACGCCTTAGGTGGTGTTTTCGTTTCTGCAGCTGGGGTTTCCACCTTGCCATGTGATAATGGAGGAAACACCAATGTTTTTGCCATGTCTCCTTGTC TTCTCAAAATTAGCAAAGGAGACATCACCAAGTGGTCTGTTGATGGCTCCTCTGATGCTATTGTTAATCCAGCAAATGAAAGAATGCTTGGAGGTGGGGG TGCAGATGGAGCCATTCATAGAGCTGCTGGACCGCAACTACGAGATGCATGCTATACTGTCCCTGAAGTCCGACCTGGAGTTCGATGCCCCACCGGAGAA GCAAGAATTACTCCAGGTTTCAATCTGCCTGCATTTCGCGTGATTCACACTGTTGGCCCCATCTATGATGTTGATGGTAACCCTGAAGCCTCACTTAGGA ATGCATACAGGAACAGCTTGATTTTGGCTAAAGACAACAACATTAAGTACATTGCATTTCCTGCCATATCTTGTGGTGTTTATGGTTATCCTTATGAGGA AGCTGCCAAAGTGGCTATATCAACAGTTAAAGAATTTGCTGATGACTTGAAAGAGGTGCATTTTGTTCTGTTCTCGGATGAAATTTACAATGTTTGGTTG GAGAAGGCAAAAGAGCTGCTCCAGGCTTAG
AA sequence Show only first row Show all	>Potri.013G092700.4 pacid=42811084 polypeptide=Potri.013G092700.4.p locus=Potri.013G092700 ID=Potri.013G092700.4.v4.1 annot-version=v4.1 MDALGGVFVSAAGVSTLPCDNGGNTNVFAMSPCLLKISKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPQLRDACYTVPEVRPGVRCPTGE ARITPGFNLPAFRVIHTVGPIYDVDGNPEASLRNAYRNSLILAKDNNIKYIAFPAISCGVYGYPYEEAAKVAISTVKEFADDLKEVHFVLFSDEIYNVWL EKAKELLQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40600			appr-1-p processing enzyme fam...		Potri.013G092700 [exp]	0	1
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024950 [exp]	5.19	0.8144
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.001G048100 [exp]	8.06	0.7910
AT2G20930			SNARE-like superfamily protein...		Potri.004G176500 [exp]	9.48	0.7910
AT4G14455		ATBS14B ,ATBET1...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.010G074100 [exp]	9.74	0.7595
					Potri.003G018400 [exp]	10.09	0.8072
AT5G48660			B-cell receptor-associated pro...		Potri.014G191500 [exp]	14.42	0.7871
AT2G24390			AIG2-like (avirulence induced ...		Potri.006G278900 [exp]	14.79	0.7938
AT2G39805			Integral membrane Yip1 family ...		Potri.008G060300 [exp]	15.23	0.7931
AT5G20700			Protein of unknown function (D...		Potri.006G078300 [exp]	15.81	0.7847
AT4G32272			Nucleotide/sugar transporter f...		Potri.006G255400 [exp]	16.61	0.7305

Compare expression of checked genes

Potri.013G092700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.