Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10840 404 / 3e-137 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 74 / 9e-14 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 70 / 1e-12 alpha/beta-Hydrolases superfamily protein (.1) AT1G52750 69 / 3e-12 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 53 / 3e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G33180 46 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1) AT2G23590 44 / 0.0001 ATMES8 methyl esterase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059400 [exp] 72 / 3e-13 AT1G15490 845 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G174900 [exp] 71 / 1e-12 AT1G80280 828 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.019G063900 [exp] 45 / 6e-05 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G219700 [exp] 43 / 0.0003 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G158800 [exp] 42 / 0.0005 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028989 [exp] 444 / 6e-153 AT3G10840 447 / 9e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10003690 [exp] 205 / 2e-63 AT3G10840 227 / 2e-72 alpha/beta-Hydrolases superfamily protein (.1) Lus10037072 [exp] 45 / 5e-05 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10036913 [exp] 45 / 6e-05 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10029011 [exp] 42 / 0.0005 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.013G092900.1 pacid=42811511 polypeptide=Potri.013G092900.1.p locus=Potri.013G092900 ID=Potri.013G092900.1.v4.1 annot-version=v4.1 ATGAGTGGGATAGTGTTTCAGCAGCAGCAGTTGGTGTTTCTTTCCCATCAGAAATGTTGTTCAGTTCCAAGAATTATGGGCCAAAGAGTGAGCTTTCCTA ATTTGCAACATGGGTATGCTGCTTCTTGTCCAAAATTTGTCAAGTTATCTCCACATGCTACAGTCAGTGGCTCTGGTGGTGCCCAATATTCTGAGCAGTG GCTGGATGCTAGAACAAAGCAGAAAAGAGAGAAAATTGCTGGTATAGATCAAGATGAATTATTAGACCCTTCACTTTTAGCTGATCCAGATAGTTGTTTT TGTGAGTTTAGAGGCGTACAGATACACCATAAGGTATATGATGCAGAATCACAGGCAAATAATTCATCTCAAAGCCACACTCTTTCTCAAGTTGCTCATA ATAATTCTTGGAAGCTTGGTCTTCCTATGATCTTGTTACATGGTTTTGGAGCTTCTGTATACTCATGGAGTCGAGCTATGAAGCCTTTGGCTGAGCTCAC TGGTTCCAAAGTTCTTGCCTTTGACAGACCAGCTTTTGGATTGACATCCAGGGTGGATGCTTCCACGCATTTATCAACTGGTACCAACGATGCAAAACCA TTGAATCCATACTCCTTGTCATTTTCAGTGCTTGCTACCTTGTACTTCATTGATTTCCTGGCAGCTGAGAAGATAGTTCTTGTGGGGCACTCAGCTGGTT CTCTTGTAGCAATTGATTCATATTTCGAGGCTCCAGAATGCATTGCAGCTCTGATTCTCATTGCCCCAGCAATACTTGCTCCACGTGCAGTTCAAAAGCT TGCGGAACAAGATAAAGTTGGAAGAGAAAATCAGACTGAAGGGGACATATCAAATTCAAATATGTTAGCAAAGCCATTTATCAAGATTTTTAAGATTTTA TTGAAGTTTATTACAGTCATTACTCAAGCAATAGTGCAGATGGCAAAGGGGATGACAGATATGCTTAACTCAATATATAAGAAAGCATTGTCAGCTATTT TGCGCTCTGCCTTTGGTGTAATGCTGATAAGGATGATAATCGATAAGTTTGGTAGAGGAGCAGTGAGGATTGCTTGGCATGATCCAAATCAAGTGACTGA ACATGTTCTAAATGGCTATACGAAGCCTTTAAGGGCCAAGGGTTGGGACAAGGCTCTTGCAGAGTTCACTGCAGCAACACTCACAAATGCTGAGTCTGAA TCAAAGCCATCAATGTCAAAAAGACTTAATGAAATCTCATGTCCTGTTTTGATCATCACGGGTGACAATGATAAAATTGTTCCATCTTGGAATGCCAAGG GACTTTCACAAGCTATACCTGGTTCTTGTCTGGAGGTAATTAAGAACTGTGGCCATTTGCCACACGAAGAAAAAGTTGAAGAATTTGTTTCAATTGTTTA TAAGTTTCTGCACGGAGCTTTTGGTGATCAGAAGGAACTATCTTTGCAAGCAGGAGCAGTAGTTTAA
AA sequence Show only first row Show all	>Potri.013G092900.1 pacid=42811511 polypeptide=Potri.013G092900.1.p locus=Potri.013G092900 ID=Potri.013G092900.1.v4.1 annot-version=v4.1 MSGIVFQQQQLVFLSHQKCCSVPRIMGQRVSFPNLQHGYAASCPKFVKLSPHATVSGSGGAQYSEQWLDARTKQKREKIAGIDQDELLDPSLLADPDSCF CEFRGVQIHHKVYDAESQANNSSQSHTLSQVAHNNSWKLGLPMILLHGFGASVYSWSRAMKPLAELTGSKVLAFDRPAFGLTSRVDASTHLSTGTNDAKP LNPYSLSFSVLATLYFIDFLAAEKIVLVGHSAGSLVAIDSYFEAPECIAALILIAPAILAPRAVQKLAEQDKVGRENQTEGDISNSNMLAKPFIKIFKIL LKFITVITQAIVQMAKGMTDMLNSIYKKALSAILRSAFGVMLIRMIIDKFGRGAVRIAWHDPNQVTEHVLNGYTKPLRAKGWDKALAEFTAATLTNAESE SKPSMSKRLNEISCPVLIITGDNDKIVPSWNAKGLSQAIPGSCLEVIKNCGHLPHEEKVEEFVSIVYKFLHGAFGDQKELSLQAGAVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10840			alpha/beta-Hydrolases superfam...		Potri.013G092900 [exp]	0	1
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	2.00	0.9397
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102700 [exp]	2.64	0.9362	Pt-GLR3.5
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.018G106400 [exp]	3.16	0.9495
AT3G17930			unknown protein		Potri.015G036500 [exp]	4.00	0.9524
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Potri.009G080800 [exp]	11.87	0.9453
AT2G03390			uvrB/uvrC motif-containing pro...		Potri.010G161600 [exp]	16.15	0.9349
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.005G127100 [exp]	23.23	0.9293	Pt-GGPS1.2
AT4G09750			NAD(P)-binding Rossmann-fold s...		Potri.005G197700 [exp]	23.68	0.9298
AT5G53280		PDV1	plastid division1 (.1)		Potri.015G022900 [exp]	24.31	0.8819
AT5G15802			unknown protein		Potri.017G099600 [exp]	27.14	0.9328

Compare expression of checked genes

Potri.013G092900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.