Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) AT1G47765 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) AT1G19160 77 / 2e-15 F-box family protein (.1) AT2G40920 75 / 1e-14 F-box and associated interaction domains-containing protein (.1.2) AT1G30790 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) AT1G32660 67 / 4e-12 F-box and associated interaction domains-containing protein (.1) AT2G31470 66 / 1e-11 DOR DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) AT1G47790 66 / 1e-11 F-box and associated interaction domains-containing protein (.1) AT2G02030 62 / 2e-10 F-box family protein (.1) AT4G12560 62 / 3e-10 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062900 [exp] 479 / 8e-170 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 79 / 3e-16 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G035500 [exp] 80 / 4e-16 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 75 / 1e-14 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 72 / 1e-13 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.007G074084 [exp] 70 / 7e-13 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.014G162600 [exp] 67 / 4e-12 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.008G144000 [exp] 67 / 7e-12 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.010G149000 [exp] 66 / 7e-12 AT5G49610 528 / 0.0 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001579 [exp] 202 / 2e-61 AT2G40920 67 / 6e-12 F-box and associated interaction domains-containing protein (.1.2) Lus10003692 [exp] 141 / 3e-39 AT3G26010 54 / 4e-08 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10011210 [exp] 76 / 1e-14 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 70 / 1e-12 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 69 / 1e-12 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 68 / 3e-12 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 68 / 4e-12 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10038603 [exp] 65 / 3e-11 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10031020 [exp] 63 / 1e-10 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 62 / 2e-10 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.013G093100.1 pacid=42812396 polypeptide=Potri.013G093100.1.p locus=Potri.013G093100 ID=Potri.013G093100.1.v4.1 annot-version=v4.1 ATGGATTTCTCAAATATTGTAAGGGCTCAAAATCAAGTGAGAGAACAAAAGGGGATGGCTTCTCACCTCACAAATAACCATGTTATCATAGCAGACATTT TATCAAGACTTCCTGTGAAGGCTCTCTCAAGGTTCAACTGTGTATGCAAGTTATGGTACTGCATGATTAATTCAGATCCTGGTTTCCAAGCCTTGCACCA CAGTCGGTCGTGGAGGAATCCTCGGTTCCTTTTCCGATTGTCTGACTTTGATTTTAACCCTCTTGAACACCTCGGATACCGATATGCTTATAACTTTGTT TCGACAGATACTGAGGGGAAAAACATCTGTCTGATGCAAATTAAGGTGCATGAACCTGTTAAACTCATATTGCCAGGTTGCTTTGGTTTGCTTGTCTTTT CTACTGACACACGTATTCATGTGTGTAACCCTAGCACTCGTCGAATTCTAGCACTGCCGGATTATAAAAGTAAAATAGCAGGATTTGGGGTCGGGTATCT GAGCTCAATAAGAAGACACAAGATCGTGCGGTTAATTCCTCGAAGACCATCAAGCCTTCATTTAGAGTGCTCAGTTTTCACTCTTGCTCCAGGGGAAGAA GGATTTTCATGGAGGGTGCTGAATGATCAGTGCCCGTATTTGGTGGATCAGTTCAGTCTTCCAGCTTTTGCAAACGAAACAATTTACTGGAAAATCGACC GTCAGCAAGCCCTCAACAGGCATAACGATTTCATTGTATCGTTCAATATTAGATACGAGAAGTTTATGACCATTACTCATCCTGCAGACTGGATTCCTAC TTCTAATCTTGACTGGAGATCACCAATTCGAAATTCAACGCAACTGGTGGAACTACGAGGGACTTTGTGCATGATACAGACATTAGCATCCTCTCATGTG GCAGTATGGAAACTGGCGGATCACAAGAATAGCATGTGGGTAAAAATATGCATGATCGACACAAGCAGAATTCATCCGAATTTTGTTGGAGAAGTCCAGT GCATCAAGGATGGAGAAATCATATTCAACTCAGCCAGTAATCATCTGCTCTACTATGATGTGAGAAAGAAAACATTTAGAAAGAAGATGCTACCGCACTC TGCAGAAAATCTTACCAGTTATTGCGAAAGTCTTACTTCCCTAACAAGATGA
AA sequence Show only first row Show all	>Potri.013G093100.1 pacid=42812396 polypeptide=Potri.013G093100.1.p locus=Potri.013G093100 ID=Potri.013G093100.1.v4.1 annot-version=v4.1 MDFSNIVRAQNQVREQKGMASHLTNNHVIIADILSRLPVKALSRFNCVCKLWYCMINSDPGFQALHHSRSWRNPRFLFRLSDFDFNPLEHLGYRYAYNFV STDTEGKNICLMQIKVHEPVKLILPGCFGLLVFSTDTRIHVCNPSTRRILALPDYKSKIAGFGVGYLSSIRRHKIVRLIPRRPSSLHLECSVFTLAPGEE GFSWRVLNDQCPYLVDQFSLPAFANETIYWKIDRQQALNRHNDFIVSFNIRYEKFMTITHPADWIPTSNLDWRSPIRNSTQLVELRGTLCMIQTLASSHV AVWKLADHKNSMWVKICMIDTSRIHPNFVGEVQCIKDGEIIFNSASNHLLYYDVRKKTFRKKMLPHSAENLTSYCESLTSLTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50870			F-box and associated interacti...		Potri.013G093100 [exp]	0	1
AT1G43730			RNA-directed DNA polymerase (r...		Potri.016G103750 [exp]	36.74	0.4169
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.018G062800 [exp]	37.94	0.4169
AT1G57775			Protein of unknown function (D...		Potri.004G110600 [exp]	43.87	0.4017
					Potri.010G072501 [exp]	62.86	0.3994
AT1G43760			DNAse I-like superfamily prote...		Potri.005G151275 [exp]	64.06	0.3994
AT1G40390			DNAse I-like superfamily prote...		Potri.003G046951 [exp]	80.48	0.3730
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.015G091600 [exp]	88.35	0.3769	PtrLHT1
AT1G57775			Protein of unknown function (D...		Potri.004G110671 [exp]	98.97	0.3387
AT5G59460			scarecrow-like transcription f...		Potri.001G242104 [exp]	121.67	0.3533
AT1G40390			DNAse I-like superfamily prote...		Potri.019G043150 [exp]	139.91	0.3274

Compare expression of checked genes

Potri.013G093100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.