Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18070 795 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 293 / 3e-91 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT5G60390 285 / 7e-91 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 285 / 7e-91 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 285 / 7e-91 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 285 / 7e-91 GTP binding Elongation factor Tu family protein (.1) AT4G20360 129 / 4e-32 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 110 / 5e-26 GTP binding Elongation factor Tu family protein (.1) AT5G08650 53 / 4e-07 Small GTP-binding protein (.1) AT5G13650 52 / 1e-06 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062500 [exp] 946 / 0 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.008G043100 [exp] 287 / 1e-91 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 287 / 1e-91 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 286 / 2e-91 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 286 / 3e-91 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 283 / 3e-90 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 283 / 3e-90 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 283 / 3e-90 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G275500 [exp] 291 / 2e-89 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041996 [exp] 832 / 0 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 825 / 0 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10009038 [exp] 672 / 0 AT1G18070 654 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10040378 [exp] 282 / 9e-90 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 282 / 9e-90 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019918 [exp] 282 / 1e-89 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10020153 [exp] 283 / 2e-87 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 283 / 1e-83 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023174 [exp] 259 / 5e-81 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 231 / 2e-70 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0023 [poplar] [flax] PF03143 [poplar] [flax] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Potri.013G093400.1 pacid=42811994 polypeptide=Potri.013G093400.1.p locus=Potri.013G093400 ID=Potri.013G093400.1.v4.1 annot-version=v4.1 ATGGCAGAAGTGACTCCACTTGATATTGCGGAGGAGATTCGTTCGTTACAGCTTGACTCAGCAGCATCAGAGGTAAATGGGGTGATTAATCCAGAAGATG CAAAGCCAGAAGAAGTTGAGGAGGTGGATAAAATGGAGGAAGATTCAAATGATAATGTCACCATAAGCACTCAGGAAATGCAGGCTGAGACATCCAAAGT GAAAGATAAGGAAGTACCTGTATCAGAAGATGTGGGAGCTCCGGTTGAGATGGAAGAAGACAATAAGAAGCGACACTTAAATGTTGTTTTTATCGGTCAT GTTGATGCTGGTAAGTCCACCACTGGGGGCCAGATACTCTTTCTTAGTGGACAGGTGGATGATCGCACAATCCAGAAATATGAGAAAGAAGCTAAGGAAA AAAGTAGAGAAAGTTGGTATATGGCTTATATTATGGACACCAATGAGGAGGAGAGGGTTAAGGGCAAAACAGTTGAAGTTGGAAGAGCGTACTTTGAAAC AGAGACATCAAGATTTACAATTTTAGATGCACCGGGCCACAAGAGTTATGTTCCAAATATGATTAGTGGAGCATCTCAGGCTGATATTGGTGTGCTAGTT ATTTCTGCTCGGAAAGGAGAATTTGAAACTGGCTATGAGAGAGGAGGGCAGACCCGTGAGCATGTTCAACTTGCAAAGACCTTGGGAGTGTCTAAGCTGC TTGTTGTTGTGAATAAAATGGATGATCCAACTGTGAACTGGTCAAAAGAAAGGTATGATGAGATCGAATCAAAGATGGTACCTTTTCTCAAGCTTTCTGG CTACAATGTGAAGAAAGATGTCCAATTCCTACCAATATCTGGTCTGCTTGGCACCAACATGAAAACAAGAATGGGTAAGGCTATATGTCCATGGTGGAAT GGCCCATGCCTTTTTGAGGCCCTTGATGCTATTGAAGTTCCTCCACGAGATCCAAAGGGTCCTTTTAGGATGCCTATTATTGACAAATTTAAGGACATGG GAACTGTTGTTATGGGCAAAGTAGAGTCTGGTAGTGTGACAGAGGGTGATTCCTTGTTGGTCATGCCAAACAAGACTGTGGTGAAAGTTCTTGCTGTATA TTGCGATGAAAACAAGGTAAGATGTGCAGGACCAGGAGAAAATGTACGGGTTAGATTATCTGGAATTGATGATGAGGATATATTGTCTGGTTTTGTGCTT TCAAGTGTTGCAAGGCCAATCACTGCAGTTACAGAGTTTGATGCACAGTTGCAAATCCTTGAACTAGTGGATAATGCAATTTTTACAGCTGGCTACAAGG CTGTCTTGCACATACATGCTGTTGTTGAGGAGTGTGAGATTGTTCAGCTGCTGCAGCAAATTGATCCAAAGACAAGGAAACCTATGAAAAAGAAAGTCCT CTTTGTGAAGAATGGTGCCATAGTTGTCTGCCGTGTTCAGGTAAACAACTTGATATGCATTGAGAAGTTTTCAGATTTTGCACAACTCGGCAGGTTTACT CTTCGTACTGAGGGGAAAACAGTTGCAGTGGGAAAAGTCATGGAACTTCCTTTGGGTTATAATTCTTAA
AA sequence Show only first row Show all	>Potri.013G093400.1 pacid=42811994 polypeptide=Potri.013G093400.1.p locus=Potri.013G093400 ID=Potri.013G093400.1.v4.1 annot-version=v4.1 MAEVTPLDIAEEIRSLQLDSAASEVNGVINPEDAKPEEVEEVDKMEEDSNDNVTISTQEMQAETSKVKDKEVPVSEDVGAPVEMEEDNKKRHLNVVFIGH VDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKEKSRESWYMAYIMDTNEEERVKGKTVEVGRAYFETETSRFTILDAPGHKSYVPNMISGASQADIGVLV ISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVNWSKERYDEIESKMVPFLKLSGYNVKKDVQFLPISGLLGTNMKTRMGKAICPWWN GPCLFEALDAIEVPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVTEGDSLLVMPNKTVVKVLAVYCDENKVRCAGPGENVRVRLSGIDDEDILSGFVL SSVARPITAVTEFDAQLQILELVDNAIFTAGYKAVLHIHAVVEECEIVQLLQQIDPKTRKPMKKKVLFVKNGAIVVCRVQVNNLICIEKFSDFAQLGRFT LRTEGKTVAVGKVMELPLGYNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18070			Translation elongation factor ...		Potri.013G093400 [exp]	0	1
AT1G17410			Nucleoside diphosphate kinase ...		Potri.003G068100 [exp]	2.44	0.7701
AT2G35920			RNA helicase family protein (....		Potri.016G068900 [exp]	4.47	0.6933
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	6.63	0.7774
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	9.38	0.6896
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065600 [exp]	11.31	0.7495	Pt-LOS1.2
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	14.69	0.7264
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.006G249100 [exp]	15.68	0.8099
AT4G36210			Protein of unknown function (D...		Potri.007G016100 [exp]	19.07	0.6283
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Potri.012G040200 [exp]	21.21	0.7093
AT3G04480			endoribonucleases (.1)		Potri.019G019600 [exp]	21.35	0.6959

Compare expression of checked genes

Potri.013G093400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.