Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56330 533 / 0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT5G15810 77 / 5e-15 N2,N2-dimethylguanosine tRNA methyltransferase (.1) AT3G02320 72 / 2e-13 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099200 [exp] 72 / 2e-13 AT3G02320 918 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Potri.004G117900 [exp] 72 / 2e-13 AT3G02320 915 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030535 [exp] 517 / 0 AT3G56330 548 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10029044 [exp] 492 / 5e-173 AT3G56330 508 / 5e-179 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10012884 [exp] 399 / 1e-137 AT3G56330 431 / 4e-150 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10034220 [exp] 91 / 3e-21 AT3G56330 94 / 1e-22 N2,N2-dimethylguanosine tRNA methyltransferase (.1) Lus10020290 [exp] 77 / 5e-15 AT3G02320 890 / 0.0 N2,N2-dimethylguanosine tRNA methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02005 [poplar] [flax] TRM N2,N2-dimethylguanosine tRNA methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.013G093500.5 pacid=42812418 polypeptide=Potri.013G093500.5.p locus=Potri.013G093500 ID=Potri.013G093500.5.v4.1 annot-version=v4.1 ATGTTGACTCTCTCTCCTAAAGCCCCATTTCTCTACAAACCCCAAAACCCTAACCCTAACCCTAAAATTCAACATTATAAACCACAAATTAACGGGATTT ACTGCAAATCCGAGCTCCAAAGCGAAAGGGGTCTCGAATTTGAGACCGGAGAGACCTTCTTTCGCCATGAAAGTGCTAAAGGCCGAGACTTGGGGGTATT AGCAGCATCCCTGTACAATCAATCCAAAGGGAAATTACGGGTGCTTGACGCATTGTGTGGGTGTGGAATCCGGTCCTTGCGCTACTTAATGGAAGCGAAA GCGGATTTTGTACTGGCAAATGATGCTAATGATGAGCACAGGAGGGTTATTTTAGAGAATTTGAAGAGAGTAGACAGAGGTTTTGGGGATGAGAGAAAAT GGGTTGTTACACATTTAGATGCTAATAGAGTGTTGAGTGAGTGTTACTTGCAAAAGGATTTTTTTGATTTGATTGATATTGATTCGTTTGGGAGTGATAT TTCCTTGTTTTTGAGGTCTGCAATGAACACATTAAGTTTTGATGGATTGCTTTATGTTACTTCTACTGATGGCCACTCTTCAGGCGGTCACCATCCTGAC CATTCTTTAGCTGCATATGGAGCATATGTACGTCCTATGCCATATTCGAATGAGGTTGGTTTGCGAATGCTTATAGGTGGGGCTGTGCGGGAAGCTTCTG TGCTTGGCTATTATATCACACCACTTTTTTCTTACTACTCGTATCATGGACCTGTTTTTAGGGTCATGCTAAGAGTAAATCGAGGGAAGCTACTTGAAAA CAGGCATTATGGTTTCATCACCTACTGCAACAATTGTGGAAATTCACAAGAATTTTCATGGGCTGAACTTGGTCAGATTAGTTGCTCTTGCAGTGGATCA CATGGTTCAAGGTCGCTCGTTATTTCAGGGCCCCTGTGGACAGGACCTCTTCATAGTGCTGCCTACATTAGTAAAATGATAAATTTGGCTGAGGAATGGG GATGGATAGGAAATGGTGCAGAAACTGATCTGGAAAAACTTCTGAAACAGATGTTGGATGAAAGTGATCCCAGATTAAAATCTGGATACATCAAGATGGA TGAGGTGGCAAGCCGGGCCAAAATCAATTCTCCTCCACTAAGGACCATGATGAGTGCAATGCAAAAGGAGGGATATGCTACAAGCAGGTCGCACATTGCT TCAAATGCAATCAAGACAGATTGTCCCATGTCAGTATGCATCAGGATTTCTAAGGAACTACAGGGTGTTGATAGTTTTTCTGTATAA
AA sequence Show only first row Show all	>Potri.013G093500.5 pacid=42812418 polypeptide=Potri.013G093500.5.p locus=Potri.013G093500 ID=Potri.013G093500.5.v4.1 annot-version=v4.1 MLTLSPKAPFLYKPQNPNPNPKIQHYKPQINGIYCKSELQSERGLEFETGETFFRHESAKGRDLGVLAASLYNQSKGKLRVLDALCGCGIRSLRYLMEAK ADFVLANDANDEHRRVILENLKRVDRGFGDERKWVVTHLDANRVLSECYLQKDFFDLIDIDSFGSDISLFLRSAMNTLSFDGLLYVTSTDGHSSGGHHPD HSLAAYGAYVRPMPYSNEVGLRMLIGGAVREASVLGYYITPLFSYYSYHGPVFRVMLRVNRGKLLENRHYGFITYCNNCGNSQEFSWAELGQISCSCSGS HGSRSLVISGPLWTGPLHSAAYISKMINLAEEWGWIGNGAETDLEKLLKQMLDESDPRLKSGYIKMDEVASRAKINSPPLRTMMSAMQKEGYATSRSHIA SNAIKTDCPMSVCIRISKELQGVDSFSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Potri.013G093500 [exp]	0	1
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	3.46	0.9614
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.016G001400 [exp]	3.87	0.9524
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	5.91	0.9517
					Potri.019G045600 [exp]	9.64	0.9360
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	9.94	0.9482
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	10.09	0.9516
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	10.19	0.9453
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	10.77	0.9564	APG2.1
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.017G065600 [exp]	10.90	0.9427
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.001G389200 [exp]	12.64	0.9429

Compare expression of checked genes

Potri.013G093500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.