Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45330 313 / 4e-107 TRPT, EMB1067 2' tRNA phosphotransferase, embryo defective 1067, RNA 2'-phosphotransferase, Tpt1 / KptA family (.1.2) AT5G23600 303 / 1e-104 RNA 2'-phosphotransferase, Tpt1 / KptA family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117000 [exp] 491 / 2e-177 AT2G45330 310 / 3e-106 2' tRNA phosphotransferase, embryo defective 1067, RNA 2'-phosphotransferase, Tpt1 / KptA family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009289 [exp] 332 / 3e-115 AT2G45330 333 / 3e-116 2' tRNA phosphotransferase, embryo defective 1067, RNA 2'-phosphotransferase, Tpt1 / KptA family (.1.2) Lus10015875 [exp] 107 / 1e-29 AT2G45330 99 / 3e-27 2' tRNA phosphotransferase, embryo defective 1067, RNA 2'-phosphotransferase, Tpt1 / KptA family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0084 [poplar] [flax] ADP-ribosyl PF01885 [poplar] [flax] PTS_2-RNA RNA 2'-phosphotransferase, Tpt1 / KptA family
Representative CDS sequence Show only first row Show all	>Potri.013G094500.1 pacid=42812226 polypeptide=Potri.013G094500.1.p locus=Potri.013G094500 ID=Potri.013G094500.1.v4.1 annot-version=v4.1 ATGTGGGCTTTTATAAGCAGTGTTCGAATTCTAGGCTGCTGTCATATCTATCTTGCAACCTCCTCTATTTTTCATAAGCGGTCTCCTCCTTTTGCTTTTG CTGCTTCCATAAAAAACAATACAAACAACAACATGAGCTCTTCCTTTTCTCATTCCAATAGAGGAGGAAGAGGTTTGGAGATGCAAAACGATAGAGAAGG GTCTAGAGGCCGAGGCCGCGGCAGAGGGGGATCTAGTAAGGATAAAATTGATGCACTTGGCAGATTACTGACACGGATCTTGCGTCATAAGGCTTCAGAG TTGAACTTGAATATGCGGAGTGATGGGTTTGTCAAAGTTGAGGATTTACTAAAGCTCAATATGAAAACATTTGCTAATGTTCCGTTAAGATCACATACTG ATGATGATGTTAAAGAGGCTGTTAGAAAAGATAATAAGCAGCGACTTAGCCTCCTGGAAGAAGGTGGGGAGCTTCTGATACGTGCTAACCAAGGCCACTC GATAAAGACAGTTGAATCTGAAAGTCTGTTAAAAGCAATTCTTTCGCCCGAGGAAATTACAGTGTGTGTACATGGGACCTATAAGAAGAATCTGGACTCA ATTTTGGAATCTGGTTTAAAGAGAATGCAAAGATTGCATGTTCACTTCTCCAGTGGTTTGCCAACAGATGTTGAAGTGATTAGTGGTATGAGACGGGATG TTAATGTTTTGATATTTCTTGATGTCAGAAAAGCACTTGAAGAGGGGATGAAGCTTTACATTTCAGACAATAGGGTGATTTTGACAGAAGGTTTTGACGG CACCATACCTGTCAAGTATTTTGAAAGAATAGAATCTTGGCCTGATAGACAGCCTATACCCTTCCAGACGACCTAA
AA sequence Show only first row Show all	>Potri.013G094500.1 pacid=42812226 polypeptide=Potri.013G094500.1.p locus=Potri.013G094500 ID=Potri.013G094500.1.v4.1 annot-version=v4.1 MWAFISSVRILGCCHIYLATSSIFHKRSPPFAFAASIKNNTNNNMSSSFSHSNRGGRGLEMQNDREGSRGRGRGRGGSSKDKIDALGRLLTRILRHKASE LNLNMRSDGFVKVEDLLKLNMKTFANVPLRSHTDDDVKEAVRKDNKQRLSLLEEGGELLIRANQGHSIKTVESESLLKAILSPEEITVCVHGTYKKNLDS ILESGLKRMQRLHVHFSSGLPTDVEVISGMRRDVNVLIFLDVRKALEEGMKLYISDNRVILTEGFDGTIPVKYFERIESWPDRQPIPFQTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Potri.013G094500 [exp]	0	1
AT1G33330			Class I peptide chain release ...		Potri.019G063800 [exp]	1.00	0.9671
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.009G169600 [exp]	3.87	0.9508
AT1G73770			unknown protein		Potri.012G046000 [exp]	5.19	0.9429
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.016G136700 [exp]	5.47	0.9583
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Potri.014G140400 [exp]	6.92	0.9611
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Potri.012G115800 [exp]	7.21	0.9589
AT1G04555			unknown protein		Potri.008G173000 [exp]	8.66	0.9431
AT3G24030			hydroxyethylthiazole kinase fa...		Potri.003G174400 [exp]	10.09	0.9340
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	10.81	0.9596
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Potri.016G119200 [exp]	14.07	0.9577

Compare expression of checked genes

Potri.013G094500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.