Plant FIBer expression Database

Potri.013G094800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24670 412 / 3e-142 TAD3, EMB2820 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
AT1G48175 43 / 0.0001 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G111100
[exp]
44 / 0.0002 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016480
[exp]
464 / 8e-163 AT5G24670 392 / 4e-135 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
Lus10040753
[exp]
0 / 1 AT5G24670 141 / 1e-49 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0109 CDA PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence
>Potri.013G094800.2 pacid=42811518 polypeptide=Potri.013G094800.2.p locus=Potri.013G094800 ID=Potri.013G094800.2.v4.1 annot-version=v4.1
ATGAAAAACAACATGATGGGCATGTGGAAAATCATCCACATCCCTGACAAACCACCGATCCCTCCTAACCAGCAACCCACTGTGAATGTGTTGGCATCAG
TTATTGATCCAAAGCATGCTAATACCCTTATAAGGCGATTAAATCAGATAGCTCCTTTTGAAAATCTATGCCATGTCAAGCGGATTCGAAAGAAGCATCT
TGAAGGAGGAAAAACTCAGCTTTCAGTAATTTTATGTCTTGCTTCTGAGGATAACAGTCTGTTGAACAGCTTGCCACAAGATGTACAAGAGTTGAGCAAT
TCCTACCAGTTGAGTCCTTTTGTTACAAAAGTTTGCAAATATGCCGCGACATCCAAAGAAGAGTGGGAAGAACAATGCAAGCTATGGCCAACCTCATACC
ATCCACCTACCTACAATATTGATGGGATTACTGGATTCAGTGCAGAGGATTCATTGTCAGTTTTCAGCTTCATGAAAGTTGCTATTGAGTTGGCAAAATC
TGGTGATGGTTTGATTGTCAATGCTGCAGTTATAGTGGATCCTTCAGTTCAGCAGATCATTACAAATGGACGTGATGAAATCTTCTCGTGGCATGCTCCC
ACGAACAAGACTTGCATCAGAAATGACTGCATTGAACAGTCCACGACCCTTATTTCTCATCAGTCTAATGGAGCAGCAAGTCTTATAACAGAAGTGCTTC
CAAATGCTTCGCCTGGTGAACCTGAAAGTTTGTCTTATGTGGTGTCTTGTTTAAACCCTTGGAAGTGGTCTGAACAGCGATCAGATACAGCTAATTCTTG
TTATTGGCATCCTTTACGACATGCTGCTGTTGTTGCCATTGAATCTTCTGCTGACAGGGACAGACGCCTGTTCCCTGGTTTAGGAGATGCTGAAGAGAAA
TCCTTTGAAACTTCACAATCATCTTATGTTGGTTCCCCAGTGAAAAGACAAAAGACGAGTGTTGCAAATGTCGAGAAGAAGGAAGCGGATCCTCCTGACA
TGCCTTCAAATTCTGTACCAGAGAGACCTTATCTGTGCACTGGTTATGACATCTATCTTGTGTGGGAGCCATGTATAATGTGTGCAATGGCACTTGTTCA
TCAAAGAATTAGACGAATATTTTATGCTTTCCCCAATCCAATTACTGGTGCATTGGGAAGTGTTCACAGACTACAAGGAGAGAAAAGCTTAAACCATCAT
TATGCTGTATTCAGAATCTGTGTGCCTGAAGAAGTTCTTGATATAGCTGGAAACAGCAAGAGCTGCTGA
AA sequence
>Potri.013G094800.2 pacid=42811518 polypeptide=Potri.013G094800.2.p locus=Potri.013G094800 ID=Potri.013G094800.2.v4.1 annot-version=v4.1
MKNNMMGMWKIIHIPDKPPIPPNQQPTVNVLASVIDPKHANTLIRRLNQIAPFENLCHVKRIRKKHLEGGKTQLSVILCLASEDNSLLNSLPQDVQELSN
SYQLSPFVTKVCKYAATSKEEWEEQCKLWPTSYHPPTYNIDGITGFSAEDSLSVFSFMKVAIELAKSGDGLIVNAAVIVDPSVQQIITNGRDEIFSWHAP
TNKTCIRNDCIEQSTTLISHQSNGAASLITEVLPNASPGEPESLSYVVSCLNPWKWSEQRSDTANSCYWHPLRHAAVVAIESSADRDRRLFPGLGDAEEK
SFETSQSSYVGSPVKRQKTSVANVEKKEADPPDMPSNSVPERPYLCTGYDIYLVWEPCIMCAMALVHQRIRRIFYAFPNPITGALGSVHRLQGEKSLNHH
YAVFRICVPEEVLDIAGNSKSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G24670 TAD3, EMB2820 tRNA adenosine deaminase 3, EM... Potri.013G094800
[exp]
0 1
Potri.005G156500
[exp]
3.46 0.8695
AT3G10140 RECA3 RECA homolog 3 (.1) Potri.016G057700
[exp]
3.87 0.8640
AT1G80700 unknown protein Potri.003G180500
[exp]
5.29 0.8783
AT3G10440 Shugoshin C terminus (.1) Potri.008G032600
[exp]
6.40 0.8416
AT3G45100 SETH2 UDP-Glycosyltransferase superf... Potri.016G130000
[exp]
8.83 0.8431
AT1G45150 unknown protein Potri.014G180700
[exp]
11.40 0.8692
AT2G02250 ATPP2-B2 phloem protein 2-B2 (.1) Potri.018G016000
[exp]
14.28 0.8867
AT4G36690 ATU2AF65A U2 snRNP auxilliary factor, la... Potri.007G028500
[exp]
15.84 0.7699
AT1G79430 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPM... Potri.011G023600
[exp]
16.73 0.8318
AT5G09790 PDE336, SDG15, ... SETDOMAIN GROUP 15, PIGMENT DE... Potri.005G058000
[exp]
18.33 0.8565

Potri.013G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.