Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10170 270 / 3e-91 SNARE-like superfamily protein (.1.2) AT1G33475 221 / 5e-72 SNARE-like superfamily protein (.1) AT4G27840 72 / 9e-15 SNARE-like superfamily protein (.1) AT4G15780 64 / 9e-12 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G32670 56 / 7e-09 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT3G54300 54 / 2e-08 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT1G04750 53 / 4e-08 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT1G04760 53 / 5e-08 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G33120 50 / 3e-07 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT5G52990 45 / 3e-05 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G048600 [exp] 465 / 1e-167 AT4G10170 254 / 1e-84 SNARE-like superfamily protein (.1.2) Potri.015G012300 [exp] 95 / 5e-23 AT5G52990 192 / 3e-60 SNARE-like superfamily protein (.1) Potri.012G016400 [exp] 89 / 1e-20 AT5G52990 200 / 2e-63 SNARE-like superfamily protein (.1) Potri.010G239900 [exp] 71 / 2e-14 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 59 / 3e-10 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.003G177700 [exp] 52 / 7e-08 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.008G209100 [exp] 51 / 1e-07 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.001G050400 [exp] 51 / 2e-07 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 50 / 2e-07 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002944 [exp] 301 / 2e-103 AT4G10170 247 / 2e-82 SNARE-like superfamily protein (.1.2) Lus10003523 [exp] 246 / 1e-77 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10022397 [exp] 92 / 5e-22 AT5G52990 189 / 3e-59 SNARE-like superfamily protein (.1) Lus10000754 [exp] 64 / 7e-12 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 61 / 9e-11 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 60 / 2e-10 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 60 / 2e-10 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10043431 [exp] 52 / 1e-07 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2) Lus10034145 [exp] 52 / 2e-07 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10011737 [exp] 51 / 2e-07 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G094900.1 pacid=42812224 polypeptide=Potri.013G094900.1.p locus=Potri.013G094900 ID=Potri.013G094900.1.v4.1 annot-version=v4.1 ATGAGTCCAATGCACAATACTGTCCATTACTGCTGCGTAGCAAAGGGTAATCGCACCTTGTATGTGTATAGTGGGGCAGACATTGAGATTGAGAATGTGG CAGCGCTGTGCTTGGAAAGGCCTCCCTCATATCACAAGTGGTATTTTGAGACGATTGCTAAAAAAACTTTTGGATTTTTTATAGAAGATGGTTTTGTTTA TTTTACGATTGTTGACGAGGGTCTTGGAAACCCAGGTGTACTTCAATTTTTAGAGCATGTAAGAGATGAATTCAAGAAGGTAGCTAGAAAGGGTTCTAGA GGAAGTTTTTCCGGTATGAACTCGATCAATATACAAGAACAACTAGTGCCTGTTATTCATCGCTTGATAACTTCTTTAGAGCATGTCTCTAGCAATGGTT GGGCTGGTGAGAGTTCCTCATCTGATAACTTAGGCCTCTCTCCATCACCTGTTAATGCAAATGGACAAATTGAAGTTGTCAGTTCTACCAAAGCCCCTTT GTTAGGTAAATCAAACAAGCAAGACAAAAGGAAGTCAAAGGATCATGTTATTACAATAAGAGATATTGAGTTAGAAGAGCATAGAAAATCTACCGATAGA GGGGCTAAGCTCGATTCAACTACATTGGATTCCAATAATCAAGCTGGAGTAGGTTCTTCAATATCCCTACAAAAGGATTTGGGTTCAATGAGGATTAGAA CAAGCTCTCAAAGTATTCGAAAGAAGTGGTGGCGCCAAGTAAGGATTGTTCTAGCTATTGATGTGGCCATTTGTTTGATTCTATTTGTAATTTGGCTATC AATCTGTGGTGGTTTCGGGTGTACTCATTGA
AA sequence Show only first row Show all	>Potri.013G094900.1 pacid=42812224 polypeptide=Potri.013G094900.1.p locus=Potri.013G094900 ID=Potri.013G094900.1.v4.1 annot-version=v4.1 MSPMHNTVHYCCVAKGNRTLYVYSGADIEIENVAALCLERPPSYHKWYFETIAKKTFGFFIEDGFVYFTIVDEGLGNPGVLQFLEHVRDEFKKVARKGSR GSFSGMNSINIQEQLVPVIHRLITSLEHVSSNGWAGESSSSDNLGLSPSPVNANGQIEVVSSTKAPLLGKSNKQDKRKSKDHVITIRDIELEEHRKSTDR GAKLDSTTLDSNNQAGVGSSISLQKDLGSMRIRTSSQSIRKKWWRQVRIVLAIDVAICLILFVIWLSICGGFGCTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10170			SNARE-like superfamily protein...		Potri.013G094900 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G381700 [exp]	2.44	0.8965	Pt-SRG1.3
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	4.69	0.8846
AT3G26000			Ribonuclease inhibitor (.1)		Potri.001G337300 [exp]	5.00	0.8310
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.001G273400 [exp]	6.92	0.8437
AT4G31410			Protein of unknown function (D...		Potri.018G006400 [exp]	8.48	0.8316
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.006G081700 [exp]	9.16	0.8519
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.008G203500 [exp]	10.95	0.8269
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.002G056500 [exp]	13.22	0.8624
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	14.69	0.8633
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.009G080200 [exp]	14.83	0.8182

Compare expression of checked genes

Potri.013G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.