Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10150 160 / 1e-48 RING/U-box superfamily protein (.1) AT1G33480 150 / 3e-44 RING/U-box superfamily protein (.1) AT4G10160 145 / 6e-43 RING/U-box superfamily protein (.1) AT4G24015 87 / 5e-21 RING/U-box superfamily protein (.1) AT2G18650 81 / 3e-17 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT2G27940 78 / 4e-17 RING/U-box superfamily protein (.1) AT5G05280 76 / 1e-16 RING/U-box superfamily protein (.1) AT4G30400 79 / 2e-16 RING/U-box superfamily protein (.1) AT4G09110 77 / 3e-16 RING/U-box superfamily protein (.1) AT1G23980 77 / 5e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088400 [exp] 103 / 2e-26 AT4G24015 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.003G142600 [exp] 94 / 4e-23 AT4G24015 144 / 3e-43 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 81 / 2e-18 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1) Potri.016G136200 [exp] 79 / 7e-18 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 78 / 9e-18 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 78 / 1e-17 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 79 / 4e-17 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.008G025300 [exp] 77 / 1e-16 AT4G40070 86 / 7e-20 RING/U-box superfamily protein (.1) Potri.008G018900 [exp] 75 / 1e-16 AT2G35910 100 / 2e-26 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032418 [exp] 96 / 1e-23 AT4G24015 180 / 9e-58 RING/U-box superfamily protein (.1) Lus10023055 [exp] 95 / 2e-23 AT4G24015 181 / 5e-58 RING/U-box superfamily protein (.1) Lus10029037 [exp] 74 / 3e-16 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10015502 [exp] 77 / 4e-16 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10019973 [exp] 77 / 6e-16 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10030728 [exp] 74 / 8e-16 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10005818 [exp] 73 / 9e-16 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1) Lus10029794 [exp] 76 / 2e-15 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10015167 [exp] 75 / 2e-15 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10013210 [exp] 73 / 2e-15 AT1G20823 207 / 3e-68 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.013G095100.5 pacid=42811453 polypeptide=Potri.013G095100.5.p locus=Potri.013G095100 ID=Potri.013G095100.5.v4.1 annot-version=v4.1 ATGTCTCGTTCCAAATCTGAGCCGCCTAGTTGCTGTTCAACAACAGCCTCTTCTACTTCACGATCACCAGTAGCTTCAACTGAGCTGAAGTTATACCAAG CTTTCATCTTTTCTGTTCCAATTTTCTTCACTTTCATCCTCCTCTTCTTGTTTTATTTGTTCTATCTTCGTCGTAGAAGGGTTGATTGGGCATCTATTAG AATGCAAGCTTCTTTGCAAGACCACACTGTTGACATCTCTAGAGTTGAGATGGGTTTGAAGAAAGAATTGAGAGAAATGCTTCCCATTATTGTATACAAG GAAAGCTTCTCTGTCAGAGATACACAATGCCCGGTATGCTTGGGCGACTACCAAGCAGAGGATAAGCTTCAACAAATACCTGCATGTGGCCACACATTTC ACATGGACTGCATTGACCATTGGCTTGCCAACCACATTACCTGCCCCCTCTGCCGTCTTTCCCTCCTTCCATCAGTCAAAGCTCCTAGTGAACCACCTAG AAATCAAGTAGAAACTGTTCAGGAATCTTCTGCGGCAGAGAATGGTGAGGAAGCATCTGTTCAACCAAGGCCAGAAAGTTGTGAAGAATCTCAAGCGACA CCACTGTCTCAGTCAATGGATGAAGAATCTGGGACTCTTCAAAACAGTGCTGGAGAAGAGCAAAGATCTGAATGTGCTGATCAAGGGAGAGAGTTCAGGT TTGCAAGGAACGAAGCCGAAGAGCATGAGAATAGTAGAGATTCTTCTGCAGCTCAATGTCATGCATAA
AA sequence Show only first row Show all	>Potri.013G095100.5 pacid=42811453 polypeptide=Potri.013G095100.5.p locus=Potri.013G095100 ID=Potri.013G095100.5.v4.1 annot-version=v4.1 MSRSKSEPPSCCSTTASSTSRSPVASTELKLYQAFIFSVPIFFTFILLFLFYLFYLRRRRVDWASIRMQASLQDHTVDISRVEMGLKKELREMLPIIVYK ESFSVRDTQCPVCLGDYQAEDKLQQIPACGHTFHMDCIDHWLANHITCPLCRLSLLPSVKAPSEPPRNQVETVQESSAAENGEEASVQPRPESCEESQAT PLSQSMDEESGTLQNSAGEEQRSECADQGREFRFARNEAEEHENSRDSSAAQCHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10150			RING/U-box superfamily protein...		Potri.013G095100 [exp]	0	1
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.018G027001 [exp]	6.92	0.8585
AT1G71910			unknown protein		Potri.013G114000 [exp]	7.07	0.8082
AT5G41800			Transmembrane amino acid trans...		Potri.001G093600 [exp]	9.27	0.7930
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.016G095500 [exp]	12.48	0.8764
AT5G40270			HD domain-containing metal-dep...		Potri.009G147750 [exp]	16.70	0.8353
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227400 [exp]	17.02	0.8041
AT3G14075			Mono-/di-acylglycerol lipase, ...		Potri.003G067900 [exp]	21.67	0.8467
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Potri.010G181600 [exp]	25.21	0.7618	Pt-HCF109.1
AT3G52105			unknown protein		Potri.009G061800 [exp]	25.98	0.8533
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.016G035800 [exp]	28.00	0.8220

Compare expression of checked genes

Potri.013G095100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.