Plant FIBer expression Database

Potri.013G095300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71340 384 / 8e-134 AtGDPD4 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039158
[exp]
439 / 6e-155 AT1G71340 400 / 3e-140 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1)
Lus10013777
[exp]
297 / 2e-98 AT1G71340 267 / 7e-87 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0384 PLC PF03009 GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence
>Potri.013G095300.1 pacid=42811393 polypeptide=Potri.013G095300.1.p locus=Potri.013G095300 ID=Potri.013G095300.1.v4.1 annot-version=v4.1
ATGGCGATCTCCACTACACTAGGAGGAGGAGGAGGAGGAGGAAGGAGACATCAACCATCGCTGCTACAGAGACATCAAGGCCGCTGGCGCAATAATCGAT
TCCCTAAACTGAAATTTTCCGGTTCAAGAAAATCATTTCGGTATATCATAATAATACTTGCCTTCATTGCTCTCTTGCCTCCCATTTTTTTCCACTTCAA
GCTCCGTCGCCTCCATCAAACGCAATTAAAGAAGTGTGGGTGGCTTAATGATCCGCCACTTGTTTGTGCTCATGGTGGTGATTCAATCAATGCCTTCCCT
AATACTATGGCTGCGTATCATTTAGCACTTCGTTCTAAAGTAGATTGCCTTGAGATTGATGTTTCTCGTTCTAAAGATGGAGTTTTATTTGCTCTCCATG
ACAGGGATTTGCAGCGGATATCTGGTAACAGTACTTCTAAAGTTGGGCACTTGAGCATGAAAGAGATTAAAGAATTAGCTGTACATCACCAGTCTGCACA
GGATTTTCATAATCATACAGTTCCCACTATTGAAGATGCTTTGATGTTGGTATCAAGTTCAGTTCGGCAGGTGATTCTGGATGCAAAAGTTGGACCTCCA
TCATATGAAAAGGGACTTGCGAAGGATATTCTTGCTGTTGTTGAGAGATTGCAGTGTCAGAATTGCCTTATTTGGGCAAAAAGTGACAATCTGGCCAGAG
ACCTAATCAAACTAAAGTCGAATGTCACGGTGGGCTATATAGTCATGGTGGATCCTGATACAGGCATTAAAACGAAACTATTGAGAATGAAGGGTGCTGG
TGTTGTTGGTGTTCACCATCCATTGATAGATGAAAAGCTAGTGGCAATTCTCCACAGAAGGAACAAAAAGGCATATGCATGGACGGTTGATGATGTGGAT
TCTATGCGGAAGATGTTGTTTGAGCATGTTGATGCTGTTGTTACAAATAACCCCAATCTTCTTCAACAGCTCATGCAAGATATTAGAACTGAATGTCGGG
AGGAAGGTTTTTCGTTGCCAAGAAGATAA
AA sequence
>Potri.013G095300.1 pacid=42811393 polypeptide=Potri.013G095300.1.p locus=Potri.013G095300 ID=Potri.013G095300.1.v4.1 annot-version=v4.1
MAISTTLGGGGGGGRRHQPSLLQRHQGRWRNNRFPKLKFSGSRKSFRYIIIILAFIALLPPIFFHFKLRRLHQTQLKKCGWLNDPPLVCAHGGDSINAFP
NTMAAYHLALRSKVDCLEIDVSRSKDGVLFALHDRDLQRISGNSTSKVGHLSMKEIKELAVHHQSAQDFHNHTVPTIEDALMLVSSSVRQVILDAKVGPP
SYEKGLAKDILAVVERLQCQNCLIWAKSDNLARDLIKLKSNVTVGYIVMVDPDTGIKTKLLRMKGAGVVGVHHPLIDEKLVAILHRRNKKAYAWTVDDVD
SMRKMLFEHVDAVVTNNPNLLQQLMQDIRTECREEGFSLPRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71340 AtGDPD4 glycerophosphodiester phosphod... Potri.013G095300
[exp]
0 1
AT1G56590 ZIP4 ZIG SUPPRESSOR 4, Clathrin ada... Potri.005G010600
[exp]
1.00 0.8814
AT3G01850 Aldolase-type TIM barrel famil... Potri.001G332700
[exp]
9.21 0.8130
AT1G43190 PTB3 polypyrimidine tract-binding p... Potri.005G194700
[exp]
13.19 0.7275
AT3G03890 FMN binding (.1.2) Potri.013G057700
[exp]
15.49 0.7734
AT1G78690 Phospholipid/glycerol acyltran... Potri.011G146800
[exp]
18.54 0.8008
AT5G49540 Rab5-interacting family protei... Potri.008G102200
[exp]
20.97 0.7960
AT1G45150 unknown protein Potri.014G180700
[exp]
24.37 0.8007
AT1G01020 ARV1 Arv1-like protein (.1.2) Potri.014G107300
[exp]
26.72 0.7513
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
28.00 0.7735
AT1G14570 UBX domain-containing protein ... Potri.010G098800
[exp]
28.82 0.6776

Potri.013G095300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.