Plant FIBer expression Database

Potri.013G095400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33500 217 / 7e-70 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039159
[exp]
110 / 5e-29 AT1G33500 99 / 5e-25 unknown protein
Lus10013776
[exp]
72 / 6e-15 AT1G33500 100 / 1e-25 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G095400.1 pacid=42810727 polypeptide=Potri.013G095400.1.p locus=Potri.013G095400 ID=Potri.013G095400.1.v4.1 annot-version=v4.1
ATGGAGGAGTACTTGCATCACATGAAGACTCTTCGCTCTCAAATGAACGAAGTGGAAGATCAAGCAGCGCAGATTTCAGTTGAAGAGCAGACTCACATCA
CTACCATTCAATCCTTTGAGAAAGACCTCGCTTCTGCAAAGTCTGAAACAAAGCGACTCAAAGAAGACACTGAGCAGATGATGAAGGCAAAGGGGGAGAT
ATGCTCACAGATATTGGAAAAACAGAGGAAGATTGCCTCTTTGGACTCTGATTCATACACTCTCGCTCAGACATTGGAGCTTATTCAACGGGAAAGAGTC
AGTTTGTCTGCCAGACTTGTAGAAAAAAGTGCTTACTATTCAAAGGTTGCAGATGATATGAATTCCAAATTACAACAACAACAGGATTGGGTCCACACTC
ACAGAATTAGTGGAGAAATGGGAGAGCATGGATCGGTGAAGGAAGAATTTGACAAGCAAACGGCAAAAACTAAAGGGAAGTGTGCTATTGATAATCACTT
GATCATGGATAATCTGGGGAATGATGCAGAAAAGAACCTAATTGCCAAGCTGGGCTCTGCCAAATCCAAGCTTGTTGAAATTGCACAAATGAAATCCAAA
CTTGTTACAGAGAACAACAAGATGAAGCAGTCTATTGAGCAGTTGAAATGCAGTGCCAAAGATTTTAAGACAGAGTTCTTGGAAATGGACATTAAGACCT
TGGAAGAAGAATACAAAGCTCTTTTATCAGATAGAGCTGGAGAAATCGAGTATTTACAATCTCTGCAAAAGCAAATTAAGCAACTTAAGGATATTTCACA
TATGGTTAAATGTGCATGTGGAGTGGAATACAAGGTGGCAATGGAGCTTTGTGCATGA
AA sequence
>Potri.013G095400.1 pacid=42810727 polypeptide=Potri.013G095400.1.p locus=Potri.013G095400 ID=Potri.013G095400.1.v4.1 annot-version=v4.1
MEEYLHHMKTLRSQMNEVEDQAAQISVEEQTHITTIQSFEKDLASAKSETKRLKEDTEQMMKAKGEICSQILEKQRKIASLDSDSYTLAQTLELIQRERV
SLSARLVEKSAYYSKVADDMNSKLQQQQDWVHTHRISGEMGEHGSVKEEFDKQTAKTKGKCAIDNHLIMDNLGNDAEKNLIAKLGSAKSKLVEIAQMKSK
LVTENNKMKQSIEQLKCSAKDFKTEFLEMDIKTLEEEYKALLSDRAGEIEYLQSLQKQIKQLKDISHMVKCACGVEYKVAMELCA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33500 unknown protein Potri.013G095400
[exp]
0 1
AT3G20530 Protein kinase superfamily pro... Potri.004G018500
[exp]
2.82 0.8936
AT3G43590 zinc knuckle (CCHC-type) famil... Potri.016G063800
[exp]
7.74 0.8518
AT1G50410 SNF2 domain-containing protein... Potri.014G005701
[exp]
8.30 0.8954
AT1G15200 protein-protein interaction re... Potri.001G208200
[exp]
12.24 0.8857
AT2G03380 Pentatricopeptide repeat (PPR)... Potri.008G092900
[exp]
13.07 0.8784
AT5G21930 ATHMA8, HMA8, P... ARABIDOPSIS HEAVY METAL ATPASE... Potri.006G220150
[exp]
13.49 0.8855
Potri.004G170350
[exp]
14.07 0.8776
AT1G32410 Vacuolar protein sorting 55 (V... Potri.001G146600
[exp]
16.06 0.8099
AT5G26594 ARR24 response regulator 24 (.1) Potri.001G051000
[exp]
18.97 0.8610
AT1G51550 Kelch repeat-containing F-box ... Potri.008G006300
[exp]
21.54 0.8548

Potri.013G095400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.