Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) AT1G34300 320 / 7e-97 lectin protein kinase family protein (.1) AT4G00340 319 / 8e-97 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 288 / 8e-85 S-locus lectin protein kinase family protein (.1) AT4G32300 286 / 1e-84 SD2-5 S-domain-2 5 (.1) AT5G24080 246 / 4e-73 Protein kinase superfamily protein (.1) AT1G11340 256 / 5e-73 S-locus lectin protein kinase family protein (.1) AT4G11900 249 / 5e-71 S-locus lectin protein kinase family protein (.1) AT4G21380 248 / 2e-70 ARK3 receptor kinase 3 (.1) AT4G21390 247 / 4e-70 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G096400 [exp] 1501 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G096000 [exp] 1287 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 1040 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096300 [exp] 749 / 0 AT1G34300 262 / 2e-80 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 672 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 670 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 669 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 669 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.016G102500 [exp] 666 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004283 [exp] 850 / 0 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 652 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 652 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 642 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 361 / 9e-113 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031230 [exp] 338 / 1e-103 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 338 / 2e-103 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10013252 [exp] 335 / 9e-103 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10031805 [exp] 324 / 1e-98 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 320 / 4e-97 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.013G095800.1 pacid=42810817 polypeptide=Potri.013G095800.1.p locus=Potri.013G095800 ID=Potri.013G095800.1.v4.1 annot-version=v4.1 ATGGCTATATCAATTATCTTGTTCTTTCTGCCTTTGATTTTCTTCTCTTCATTTTCATCTTCAACAATTGACAGATTAAGCGGAGCCTCATCTTTATCAG TGGAACATGCAGACGATGTTTTGACTTCGCCGAATGGCGTTTTCTCGGCGGGGTTTTTCCCCGTCGGAGATAATGCTTACTGCTTTGCTATATGGTTTAG TGAGCCATATAGTGAAGGCAACCGCACCATTGTTTGGATGGCAAACCGTGACCAGCCAGTTAACGGAAGAAAGTCAGAGCTTTCTCTACGTAAATCGGGT AATGTCATAATTACCGATGCTGGCCGTCTCACTGTTTGGTCCACAGACACTGTTTCAGAATCCTCTGTGTTTCTATACCTCCATGAAAATGGTAATCTTA TACTACAAAAGTCGGAAGGTGGTGTGCTTTGGCAAAGCTTCGATTCTCCGACAGATACTCTACTTCCTCAGCAACTACTCACCAAGGATATGCAGCTTGT TTCATCTAGAAGCCAAGGGAACTATTCTTCAGGATTCTATAAGCTTTATTTTGATAACGATAACGTTCTCCGTCTTCTTCACGGAGGTCCTGAAATCACC GTTTATTGGCCGGATCCGGAGCTTATGAGCTGCGAAGCTAGCAGGTCAACTTTTAACAGCAGCCGAATTGCTTTTCTAGATTCATTGGGTTACTTTAGCT CATCTGACAATTTTACTTTCATGTCTGCTGATTATGGAGAAAGAGTCCAGAGAATATTGAAACTAGATTTCGATGGTAATATTCGGCTATACAGTCGAAA ATACAGGATGGACAAGTGGACTGTTTCATGGCAAGCCATGTCTCAACCTTGCAGGATTCACGGGACTTGTGGACCTAACAGTATTTGTAGCTATGTTCCT CACTTTGGTAGGAAATGTTCATGCCTTCCAGGATTCAAGATCAGGGATCGTACGGACTGGTCATTGGGTTGTGTACAAGAATTCAATCTCACTTGTACCA GAAATGAGACAGGTTTCCTTAAGCTATCTAATGTTGAGTTTTTTGGCTACGACTATGGCTTCTTCGCCAATTACACCTTCGGAATGTGTGAAAACTTGTG CTTGCAGATATGTGACTGCAAAGGATTCCAGTTCAAGTTCATCAAGCACGCCCATCCCAGTAACATTCCTTATTGTTACCCAAAGACACAGTTGCTGAAT GGGCATCATTCACCAAATTTCGAAGGAGACATCTATCTGAAGGTGCAAAAAACCTTGCCTATTCAAGAAATTGGGTTAGATTGTTCCAGCACAGTTGTCA AGCAGCTGAACAGAACATACACAAAACACCAAGAAAATGCATCACTAAAGTTTGTTGTTCGGTTTGCGATGGTAGTTGGATCGGTTGAGCTCGGTGTCAT TTTCATAGTGTGGTGTTTTTTTATAAGAACTCACCGGAACGCAACCGCAGGTACGCAAAATTACCACAGATTTACCACTGGCTTCAGAAAATTCACCCTT TCAGAGCTAAAAAAGGCGACTCAAGGATTTAGCAAAGAGATTGGAAGAGGTGCTGGAGGAGTTGTTTACAAGGGAATGTTATCTGATCATAGAATAGCAG CCGTTAAGCGACTGAATGATGCTTACCAAGGAGAAGCAGAGTTCCAGGCAGAAGTTAGCACAATTGGGAAACTTAATCACATGAACTTGACAGAGATGTG GGGATATTGTGCAGAAGGAAAGCACAGGCTTTTGGTATACAAGTACATGGAGCATGGATCCTTGGCAGAACAACTCTCTTCCAATTCACTTGGTTGGGAA AAGAGGTTTGACATCGCAGTAGGGACTGCTAAAGGCCTTGCTTATTTACATGAAGAATGCCTAGAGTGGGTTTTACATTGTGATGTAAAGCCTCAGAACA TACTTCTCGACAGCAACTACCAGCCAAAGGTGTCAGATTTTGGATTATCTCGACCACTGAAAAGAGGTAGCCAAGTTAACAAAGGCTTCTCAAAGATAAG AGGAACTAGAGGTTACATGGCTCCGGAGTGGGTTTTCAATCTGCCTATCACCTCGAAAGTGGATGTTTATAGCTATGGCATGGTATTGCTGGAGATGATC AGTGGAAAGTGTCCAGCAGAGGAGATAGAGAACAGGAGGCTGGTTACATGGGTGAGAGAAAAGATGAAGCAAGCTACTGAAATGAGCTCTTGGATAGAAA TGATCATAGACCCCAAATTGGAAGGAAAATATGACAAGGGTAGGATGGAAATCCTGTTTGAGGTGGCTCTAAAATGTGTAGCTGAAGACAGAGATGAGAG ACCAACAATGAGCCAAGTAGTTGAAATGCTTTTGCACCAGGAAAATGATTCTGAACTTGTCTAA
AA sequence Show only first row Show all	>Potri.013G095800.1 pacid=42810817 polypeptide=Potri.013G095800.1.p locus=Potri.013G095800 ID=Potri.013G095800.1.v4.1 annot-version=v4.1 MAISIILFFLPLIFFSSFSSSTIDRLSGASSLSVEHADDVLTSPNGVFSAGFFPVGDNAYCFAIWFSEPYSEGNRTIVWMANRDQPVNGRKSELSLRKSG NVIITDAGRLTVWSTDTVSESSVFLYLHENGNLILQKSEGGVLWQSFDSPTDTLLPQQLLTKDMQLVSSRSQGNYSSGFYKLYFDNDNVLRLLHGGPEIT VYWPDPELMSCEASRSTFNSSRIAFLDSLGYFSSSDNFTFMSADYGERVQRILKLDFDGNIRLYSRKYRMDKWTVSWQAMSQPCRIHGTCGPNSICSYVP HFGRKCSCLPGFKIRDRTDWSLGCVQEFNLTCTRNETGFLKLSNVEFFGYDYGFFANYTFGMCENLCLQICDCKGFQFKFIKHAHPSNIPYCYPKTQLLN GHHSPNFEGDIYLKVQKTLPIQEIGLDCSSTVVKQLNRTYTKHQENASLKFVVRFAMVVGSVELGVIFIVWCFFIRTHRNATAGTQNYHRFTTGFRKFTL SELKKATQGFSKEIGRGAGGVVYKGMLSDHRIAAVKRLNDAYQGEAEFQAEVSTIGKLNHMNLTEMWGYCAEGKHRLLVYKYMEHGSLAEQLSSNSLGWE KRFDIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDSNYQPKVSDFGLSRPLKRGSQVNKGFSKIRGTRGYMAPEWVFNLPITSKVDVYSYGMVLLEMI SGKCPAEEIENRRLVTWVREKMKQATEMSSWIEMIIDPKLEGKYDKGRMEILFEVALKCVAEDRDERPTMSQVVEMLLHQENDSELV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19130			S-locus lectin protein kinase ...		Potri.013G095800 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Potri.013G096300 [exp]	1.00	0.9688
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096000 [exp]	2.44	0.9640
AT1G32900		GBSS1	granule bound starch synthase ...		Potri.001G449500 [exp]	3.16	0.9072	Pt-GBSSI.3
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096400 [exp]	3.46	0.9534
AT3G16560			Protein phosphatase 2C family ...		Potri.008G207700 [exp]	16.70	0.8761
AT1G07030			Mitochondrial substrate carrie...		Potri.016G125200 [exp]	23.87	0.8708
AT1G22160			Protein of unknown function (D...		Potri.002G092900 [exp]	39.33	0.8842
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.015G027300 [exp]	40.06	0.8128
AT1G02630			Nucleoside transporter family ...		Potri.006G068100 [exp]	40.98	0.8429
AT1G60470		ATGOLS4	galactinol synthase 4 (.1)		Potri.010G042000 [exp]	45.47	0.8700

Compare expression of checked genes

Potri.013G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.