Plant FIBer expression Database

Potri.013G096600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71350 818 / 0 eukaryotic translation initiation factor SUI1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041458
[exp]
868 / 0 AT1G71350 810 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1)
Lus10034314
[exp]
862 / 0 AT1G71350 809 / 0.0 eukaryotic translation initiation factor SUI1 family protein (.1)
Lus10031485
[exp]
71 / 5e-13 AT3G05590 333 / 9e-116 ribosomal protein L18 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01253 SUI1 Translation initiation factor SUI1
Representative CDS sequence
>Potri.013G096600.4 pacid=42811327 polypeptide=Potri.013G096600.4.p locus=Potri.013G096600 ID=Potri.013G096600.4.v4.1 annot-version=v4.1
ATGTTCAAGAAGGCGATTGAGGCAAAATCTCACCAGAGACTCTCTGGAGCCGACCGGAAAAAGCTCAAACGAACTATCAGAGACCGCTTTCCTCGCGCTT
CCGATGCCGATATAGATGCTTTGCTCCCTCCCAAAGCGGAAATTACTGTTTCAAAGTTTGTAAATAGGGTTCATTTATATGGTGTTGAAGGTAACTTTCC
TATGTTTTTCGATGTTGATGGCCGAGGCTCTGAAATTTTCCCCACAGTTTTTGCCCTCTGGAAGGTCCCTGAGATGTTGCCTTCTTTCATTCTGAAAGGG
GGTGAGGTATCTCAATTTGTCATTGGAGGAGCAGATCTGATGTTTCCTGGTATCAGTATACCTGCTGAAGGTCTTCCTTCTTTTTTAGTAGGTGAGCCAT
GGGCTGTAAAAGTTCCTGGGAATCCAGCACCTATTGCCGTTGGGTCTACCACTATGAGCACTGCTGAAGCCTTGAAGGCTGGTTTGCGCGGAAAGGCCTT
ACGGATAACTCACTATTATCGGGATTTACTTTGGGAGTCAGTTGAGGGACATTATGTGCCAAATGCAGGTTTCCTTGAAGATGTTGTCTTTGAGGATCCT
GTATTCTTATCATCTGCCCAGGTTCCTGATTCATGTGAAGGTTCTGGTGATTCTTCAAATCATGAGAATGATGGTGTTGACAGCAAAGAAGTTGGGGAAT
CTGCTGATGTAAAAGATCCCACATCAGACAGTCATCCCACTTCCAAGACACAACTTGATTCTGATACTGATACTGTAGAACAAGTAACAAAAGCTGTAGG
TGGTTTTAAGGTTACGGATAATATTGCTGCTGATGAATCCACCACTGTTGTTGAAGAACAGCATACTTTGTCTGCTGAAGACGTAGATGCTTATTTGGAC
AAATGTCTTTTGCAAGCCCTGCATACAACTGTCAATGACAAAGATCTTCCCATGCCTGGAAGCACTTTATGGTCCAACCATGTATTACCTTGTAGGCCTT
CAGGTATCACACTAGATATCAAAAAATCATCACACAAGAAATTGTCCAAGTGGTTACAAGCTAAATCATCTGCAGGATTGATTTCAGTAAAAGAAGACAA
ATATAAAAAGGAAACTGTCTTATTTTCTGTGAACCGCAGTCACCTAGACTACCTATCCTTCAAACCAGAAAGAAGGCAGGAGCAGAAGGTTGATCAGGGT
GGTGATCAGGCTATTAAAGAAACCCGATCACCAAAACTGCTTGAAGTGTCCGAGATTTATAAACCAAGTGTACATGTCAATCCCATTTTTGCTTCTGTTG
GAGCTGATACTGGGAAGCTATACAGTGCTTCAGAAGCCTCTGATGTTGTATTCAAGTACATTGAAAAAGGACATCTGGTAAAGACAATGAACAAGTCCAT
TGTGGTTCTGGATCCAACCTTATGTGATGCTTTGTTCAAGGGAGCTATCAAGAAAGGATCAGCATACCCGACTGAGATTCATAAGAAAGATTTAGGATCT
ACATTTGTAAGCCGGATGCAGGCCCACCACGTTGTAACCAGAGGAAGTGAATCAGTTGTTCGTAAAGGTTCAGTGAGAACAATTCAGATAATGACTGAAA
GACGTCAAGGTAACAAGAAGGTGACGAAACTCTCAGGCATGGAAACATTCTTGATGGATGCTGATGCATTAGCGTCAGAACTGCAGAAAAAGTGTGCTTG
TAGTACATCAGTGTCAGAGTTACCAGGTAAGAAAGGGCATGAGGTTCTTATTCAAGGTAGTGTAATTGATGATGTGGCAAGACATCTGGTTGAACAGTAT
GGGGTGCCCAAAAGATACATTGAAATTCTTGATAAAACTAAAAAATAA
AA sequence
>Potri.013G096600.4 pacid=42811327 polypeptide=Potri.013G096600.4.p locus=Potri.013G096600 ID=Potri.013G096600.4.v4.1 annot-version=v4.1
MFKKAIEAKSHQRLSGADRKKLKRTIRDRFPRASDADIDALLPPKAEITVSKFVNRVHLYGVEGNFPMFFDVDGRGSEIFPTVFALWKVPEMLPSFILKG
GEVSQFVIGGADLMFPGISIPAEGLPSFLVGEPWAVKVPGNPAPIAVGSTTMSTAEALKAGLRGKALRITHYYRDLLWESVEGHYVPNAGFLEDVVFEDP
VFLSSAQVPDSCEGSGDSSNHENDGVDSKEVGESADVKDPTSDSHPTSKTQLDSDTDTVEQVTKAVGGFKVTDNIAADESTTVVEEQHTLSAEDVDAYLD
KCLLQALHTTVNDKDLPMPGSTLWSNHVLPCRPSGITLDIKKSSHKKLSKWLQAKSSAGLISVKEDKYKKETVLFSVNRSHLDYLSFKPERRQEQKVDQG
GDQAIKETRSPKLLEVSEIYKPSVHVNPIFASVGADTGKLYSASEASDVVFKYIEKGHLVKTMNKSIVVLDPTLCDALFKGAIKKGSAYPTEIHKKDLGS
TFVSRMQAHHVVTRGSESVVRKGSVRTIQIMTERRQGNKKVTKLSGMETFLMDADALASELQKKCACSTSVSELPGKKGHEVLIQGSVIDDVARHLVEQY
GVPKRYIEILDKTKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71350 eukaryotic translation initiat... Potri.013G096600
[exp]
0 1
AT2G32120 HSP70T-2 heat-shock protein 70T-2 (.1.2... Potri.008G152000
[exp]
7.61 0.9808
AT5G66110 HIPP27 heavy metal associated isopren... Potri.005G110400
[exp]
12.00 0.9790
AT1G30070 SGS domain-containing protein ... Potri.011G085100
[exp]
14.56 0.9625
AT1G77780 Glycosyl hydrolase superfamily... Potri.010G088500
[exp]
15.62 0.9790
AT4G01290 unknown protein Potri.004G073400
[exp]
18.57 0.9759
AT4G10570 UBP9 ubiquitin-specific protease 9 ... Potri.001G449000
[exp]
20.39 0.9694
AT2G33460 RIC1 ROP-interactive CRIB motif-con... Potri.008G168900
[exp]
21.63 0.9743 Pt-RIC1.1
AT2G23090 Uncharacterised protein family... Potri.009G090800
[exp]
21.67 0.8897
Potri.016G032550
[exp]
24.49 0.9718
AT5G41990 EIP1, ATWNK8, W... EMF1-Interacting Protein 1, wi... Potri.003G145300
[exp]
24.89 0.9608 WNK8.3

Potri.013G096600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.