Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 149 / 4e-38 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G36150 137 / 6e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 130 / 6e-32 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G17680 122 / 5e-29 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G45200 122 / 5e-29 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17880 116 / 3e-27 CSA1 constitutive shade-avoidance1, disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44870 115 / 8e-27 TTR1, LAZ5 tolerance to Tobacco ringspot virus 1, LAZARUS 5, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45230 113 / 3e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45250 108 / 1e-24 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45060 100 / 4e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G104301 [exp] 706 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103101 [exp] 702 / 0 AT4G12010 236 / 1e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G097300 [exp] 695 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 693 / 0 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G104901 [exp] 687 / 0 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 657 / 0 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 558 / 0 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098000 [exp] 545 / 0 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097000 [exp] 502 / 8e-167 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003749 [exp] 198 / 2e-54 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 177 / 2e-47 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 142 / 7e-36 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018616 [exp] 135 / 2e-33 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10028043 [exp] 118 / 2e-28 AT5G17680 59 / 4e-09 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 119 / 4e-28 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 107 / 2e-24 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 104 / 2e-23 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10028042 [exp] 90 / 2e-19 AT5G17680 145 / 2e-38 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005171 [exp] 86 / 2e-17 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G097832.1 pacid=42812504 polypeptide=Potri.013G097832.1.p locus=Potri.013G097832 ID=Potri.013G097832.1.v4.1 annot-version=v4.1 ATGGCTAACAGTAGTATTGAGCAATTATGGTATGGTGGCAAGAGTGCAGTTAATTTGAAAATCATCAATCTCAGCAACTCTCTAAACCTGATCAAGACTC CAGATTTTACAGGAATTCCGAATCTCGAGAACCTAATTCTTGAAGGTTGTACAAGTTTGTTTGAGGTCCATCCATCACTTGCACGTCACAAGAAGCTTCA ATATGTGAATCTTACGGATTGCGTAAGTATTAGGATTTTCCCTAGCAACCTTGAAATGGAATCACTTAAAGTTTGCATTCTTGATGGATGCTCAAAACTT GAGAAGTTTCCAGATATAGTGGGAAACATGAACAAATTGATGGTGCTTCATTTGGATGAGACTGGTAGTACAAAACTATCTTCATCAATTCGTCATTTGA TTGGCTTAGAAGTATTGAGCATGAACAACTGCAAGAACCTTGAAAGCATTCCGAGTAGCATATGTTGTTTGAAATCCCTTAAAAAACTCGATCTGTCTGG CTGCTCTGAACTTCAAAATATACCACAGAATTTAGGGAAAGTAAAAAGTTTGGAGGAGTTTGATGTAAGTGGAACTTCAATAAGACAACTGCCAGCATCC CTTTTTCTTTTAAAGAATCTTAAAGTATTATCTTTGGATGGATTCAAAAGACTAGTTGTGCTGTCTTCTTTGTCTGGTCTGTGTTCTTTAGAAGTACTCG GTTTACGCGCTTGCAATCTAAGAGAAGGGGCACTTCCTGAAGATATTGGCTGCTTATCTTCATTGACGTCTTTAGATCTGAGCCGGAATAACTTTGTTAG CCTGCCTAGGAGCATAAATATGCTTTATGAACTGGAAAAGCTTGTATTGGAGGATTGCACGATGCTTGAATCATTGCCTGAGGTTCCGTCTAAAGTTCAA ACGGTATATTTGAATGGTTGCATAAGCCTAAAAACAATTCCAGATCCGATAAAGCTAAGCAGTTCCAAAATCTCAGAGTTTATATGTCTTAACTGCTGGG AATTGTACAATCATAATGGCCAAGACAGCATGGGGTTGACCATGCTTGAAAGATACCTCAAGGGTTTGTCTAATCCAAGACCTGGATTTGGTATCGCTGT TCCAGGAAATGAAATTCCAGGCTGGTTTAACCATCAAAGAAAGGGATCTTCAATTAGTGTGCAAGTGCCTAGTTGTGGCATGGGGTTTGTTGCGTGTGTT GCATTCAGTGCAAATGGTGAAAGTCCTTCTCTTTTTTGTCATTTCAAAGCCAATGGAAGAGAGAATTATCCTTCGCCGATGTGTATTAGTTGTAACTCAA TCCAAGTTCTGTCAGATCATATTTGGCTATTCTATCTATCTTTTGATCATCTTAAAGAATGGAAGCATGAATCCTTTAGCAACATTGAGTTGTCATTTCA TTCTTCCGAGCAACGAGTAAAGGTGAAGAATTGTGGTGTCTGTTTGTTATCTTCTGTATATATTACATCACCATTTTTAAAAACTGTTATTACAATCGGA AAAAAACCACGTGGGGACACGTGA
AA sequence Show only first row Show all	>Potri.013G097832.1 pacid=42812504 polypeptide=Potri.013G097832.1.p locus=Potri.013G097832 ID=Potri.013G097832.1.v4.1 annot-version=v4.1 MANSSIEQLWYGGKSAVNLKIINLSNSLNLIKTPDFTGIPNLENLILEGCTSLFEVHPSLARHKKLQYVNLTDCVSIRIFPSNLEMESLKVCILDGCSKL EKFPDIVGNMNKLMVLHLDETGSTKLSSSIRHLIGLEVLSMNNCKNLESIPSSICCLKSLKKLDLSGCSELQNIPQNLGKVKSLEEFDVSGTSIRQLPAS LFLLKNLKVLSLDGFKRLVVLSSLSGLCSLEVLGLRACNLREGALPEDIGCLSSLTSLDLSRNNFVSLPRSINMLYELEKLVLEDCTMLESLPEVPSKVQ TVYLNGCISLKTIPDPIKLSSSKISEFICLNCWELYNHNGQDSMGLTMLERYLKGLSNPRPGFGIAVPGNEIPGWFNHQRKGSSISVQVPSCGMGFVACV AFSANGESPSLFCHFKANGRENYPSPMCISCNSIQVLSDHIWLFYLSFDHLKEWKHESFSNIELSFHSSEQRVKVKNCGVCLLSSVYITSPFLKTVITIG KKPRGDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12010			Disease resistance protein (TI...		Potri.013G097832 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.017G104301 [exp]	1.41	0.9038
AT4G12010			Disease resistance protein (TI...		Potri.017G103101 [exp]	2.44	0.8858
AT5G17680			disease resistance protein (TI...		Potri.013G097300 [exp]	2.44	0.8480
AT5G17680			disease resistance protein (TI...		Potri.017G104901 [exp]	5.29	0.7804
AT5G50180			Protein kinase superfamily pro...		Potri.001G343900 [exp]	6.24	0.7315
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	8.66	0.7780	Pt-ACA1.1
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.010G153100 [exp]	9.89	0.7576
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.002G160500 [exp]	11.04	0.6086
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.011G131700 [exp]	11.95	0.7350
AT1G28760			Uncharacterized conserved prot...		Potri.013G064800 [exp]	12.24	0.7401

Compare expression of checked genes

Potri.013G097832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.