Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 592 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 531 / 5e-167 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G12010 516 / 3e-161 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27170 467 / 2e-141 transmembrane receptors;ATP binding (.1.2) AT5G44510 452 / 7e-138 TAO1 target of AVRB operation1 (.1) AT5G18360 437 / 3e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18350 444 / 2e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 436 / 8e-133 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G16870 436 / 2e-132 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 433 / 1e-130 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098000 [exp] 2212 / 0 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097000 [exp] 1915 / 0 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 1726 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 1712 / 0 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 1695 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104901 [exp] 1690 / 0 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 1649 / 0 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G103101 [exp] 979 / 0 AT4G12010 236 / 1e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G069200 [exp] 977 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011104 [exp] 759 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 706 / 0 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 649 / 0 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029722 [exp] 595 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 581 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 577 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 574 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10019708 [exp] 523 / 3e-160 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 485 / 7e-150 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005171 [exp] 480 / 4e-148 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [poplar] [flax] STIR PF01582 [poplar] [flax] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Potri.013G098550.1 pacid=42812726 polypeptide=Potri.013G098550.1.p locus=Potri.013G098550 ID=Potri.013G098550.1.v4.1 annot-version=v4.1 ATGGCCTCATCCAGCATGCAGAAAGCAGCCTCATCTTCTTATTCTCCTCCCCAATGGAAGTATGATGTCTTCCTTAGTTTTAGAGGCAAAGACACACGGA ATAACTTTACTAGCCATCTATATTCTAATTTGGAACAAAGAGGCATCGATGTATACCTGGATGATAGGGGGCTAGAGAGAGGAAAGACCATCGAACCTGC TCTCTGGCAGGCCATCGAAGATTCAAGATTTTCAATCGTTGTGTTTTCAAGAGATTACGCGTCTTCACCATGGTGCTTAGATGAGCTTGTCAAGATTGTT CAGTGCATGAAAGAGATGGGGCACACTGTTCTACCAGTTTTTTATGATGTGGATCCATCAGAGGTAGCCGATCAGAAAGGGAATTATAAGAAGGCTTTCA TTGAGCATAAGGAAAAGCACTCGGGAAATCTGGACAAGGTAAAATGCTGGAGTGATTGTCTCTCCACAGTGGCCAATCTATCTGGTTGGGATGTACGGAA CAGGGACGAGTCACAATCAATTAAAAAGATTGTTGAATATATACAGTGCAAACTAAGCTTCACTTTGCCAACAATTAGCAAAAATCTAGTTGGAATAGAT TCTCGTCTGAAGGTATTGAATGAATATATAGACGAACAAGCAAATGATACTCTCTTTATAGGGATATGTGGAATGGGTGGCATGGGAAAGACAACTGTTG CAAGAGTCCTGTATGATAGGATTCGTTGGCAATTCGGTGGCAGCTGCTTCTTAGCAAATGTGAGAGAAGTTTTTGCAGAGAAAGATGGACTGTGTCGTTT ACAGGAACAACTTCTTTCGGAAATCTCAATGGAGCTTCCCACTGCACGGGATTCTTCAAGAAGGATTGATTTGATAAAGCGCAGGCTGCGGCTTAAAAAG GTTCTTCTTATTCTCGATGACGTAGATGATGAAGAACAATTACAGATGTTGGCTGCAGAGCATGGAACGTTTGGTCCAGGGAGCCGGATTATCATAACGA GCAGAAATAAACATGTGCTGGATAGCCATGGTGTTACTAGAATATACGAGGCTGAGAAATTAAATGATAAAGATGCTCTTATCTTATTTAGCTGGAAAGC TTTCAAAAGAGACCAGCCTGCCGAAGATTTATCGGAACTGTCCAAGCAAGTTGTGGGTTATGCTAATGGCCTTCCACTAGCTCTTGAAGTCATAGGTTCG TTCTTGCATAAAAGAGGTCTGCGTGAATGGAAAAGTGCAATTGATAGAATGAATGACATTCCTGACAGGAAGATTATTGATGTTCTTCGCATTAGTTTTG ATGGCCTCCATGAATTAGAGAAGAAAATATTTTTAGATATCGCTTGCTTCTTGAAGGGGATGAAAAAGGATCGTATAACAAGGCTACTTGACAGTTGTGG GTTCCATGCAGATATTGGGATGCAGGCTCTTATTGAGAAATCCCTTATAAGAGTCTCACGAGATGAGATAAGGATGCATAATTTATTACAGAAAATGGGT GAAGAAATTGTTCGTTGTGAATCCCCTGAAGAGCCTGGAAGACGCAGTAGATTGTGCACGTACAAGGATGTCTGCGACGCACTGAAGGACAGCACAGGAA AAATAGAAAGTATATTCGTGGACTTGCCCAAAGCAAAAGAGGCACCATGGAACATGACAGCCTTCTCAAAAATGACCAAACTAAGATTGCTCAAAATTCA CAACGTGGATCTTTCTGAAGGACCTGAGTATCTCTCAAACGAGTTACGATTCCTTGAATGGCATGCTTACCCTTCGAAGTCATTGCCAGCTTGTTTCCGT CTGGATGACCTTGTTGAACTCTACATGTCTTGCAGCAGTATTGAGCAATTATGGTGCGGGTGTAAGATTTCAGTTAATCTGAAAATTATCAATCTCAGCA ACTCACTGTACCTGACCAATACTCCGGATTTTACTGGAATTCCAAATCTCGAGAGTCTGATTCTTGAAGGTTGTGCAAGTTTATCTGAGGTCCATCCATC ATTTGGACGTCACAAGAAGCTTCAATTTGTGAATCTAGTGAACTGCAATAGTTTTAGGATTCTCCCAAGCCACCTTGAAATGGAATCATTAAAAGTTTGC ACTCTCAATGGCTGCTCGAAACTTGACAAGTTTCCTGATATAGTAGGAAACATGAACTGCTTAAGGGAGCTTCGTTTAGATGGGACTGCTATTGCAGAAC TATCCTCATCATTTCATTGTTTGGCTGGTTTAGTTCTATTGAGCATGAACAGTTGTGGGAACCTTGAAAGTATTCCCAGTAGCATAAGTGGTTTGAAATC CCTCAAAAGACTTGATGTGTCTGACTGCTCTGAACTTACGAACATACCAGAGAATTTGGGGGAAGTAGAAAGTTTGGAGGAGTTTGATGCAAGTGGAACT TCAATTAGACAGCCGCCAGCGTCTATTTTTCTTCTGAAGAATCTTAAAGTATTGTCTTTTAATGGATGCAAAAGAATAGCTGTGAATCTCACGGATCAAG TATTGCCTTCTTTGTCTGGTTTGTGTTCTTTAGAAGAACTGGATTTACGCGCTTGTAATCTAGGAGAAGGAGCAGTTCCTGAAGATATTGGCTGCTTATC ATCATTGAGGAGTCTAAATCTGAGCAGAAATAACTTTGTTAGCCTACCTAAAAGCATAAATCAGCTTTCTAGGCTTGAAAAGCTTGCCTTGAATGATTGC GTGATGCTTGAATCATTGCCTGAGGTTCCCTTGAAAGTTCAAAAAGTAAAATTGGATGGCTGTTTAAGACTAAAAGAAATTCCAGATCCAATAAAGCTAA GCAGTCTGAAAAGATCAGAGTTTAAATGTCTTAACTGTTGGGAATTGTACAAGCATAATGGCCAAAACAACATGGGTCTGAACATGCTTGAAAAATACCT CCAGGGCTCATCTCCAAGACCTGGATTTAGTATTGTTGTTCCTGGAAATGAAATCCCAGGTTGGTTTACTCATCAAAGTAAGGAATCTTCAATTAGGGTG CAGGTGCCTTCTAATTATATAGATGGGTGGATGGGGTTTGCTGCATGTGTTGCATTCAGTGCATATGGTAAAAGCCCTCTCTTTTGTCATTTCAAAGTCG ATGGAAAAGAGAATTATCCTTCGCCCATGTATATAGGTTGTAACTCTATGCAAGCTCTGTCAGATCATCTGTGGTTATTCTATTTATCTTTTGATTATCT GAAAGAGCTTAAAGAACGGGAGAATGAAGCCTATACCGAACTAGAGTTGTCGTTTCATTCTTACGAGCGAGGAGTAAAGGTGAAGAATTGTGGTGTCCGT TTGGTAAATTCTCCGTACACTCCATCATGGCAATCACCTACTGGTCGTCTTATTGTTGCAAGCAAAGAAGCAGCTTCTTCATATATTGATTCTTTGGCTA ATTCATCTTACTGTCAATGGATGCATGATGTCTTCTTTAGCTTCAGAGGTGAGCACACTAGCAATAATTTCACCCATTTGTATACAGCTCTAGTCCAGAG AGGCATTATCCGAGGTGACACAGAACTAGAGTATCTAAGGGTAATTGAATCGAGTCTCCTAAGGGACATCAAAGAGTCGGGGCTGTCAATTATTAAATTT GCAAGAGATTATGCTTGTTCAGCTTGGTGGTTTGACGAACTTGTCAAGATTGTTGGATTCATGAAAAAGATGAAATCGGACACTGTTTTTCCAGTTTCAG CAGTTTCTTATAATGTCGAGCAATCAAGGGTAGATGCACAAGCAGAGAGTTACACGATTGTCTTCGACAAGGATGAAGAAGATTTCAGTGAAGATATGGA GAAGGTACGAAGGTGGATGGATATTCTCACCGAGGTCGCCATTTCATCTGGGTCGGAATCATCGAAAAGGGTGAATGGCATGGATTGGCCAGTTGGGAAT AGGTTTCACGGGACTGACATGGAGTTTCTGCTGAACTTCCGGAAGAAGGTCCTTGAGGAAAACGAGCTTGATATTGATTTTGAATTTGATGTTACTCTTG AGGAAAACTAA
AA sequence Show only first row Show all	>Potri.013G098550.1 pacid=42812726 polypeptide=Potri.013G098550.1.p locus=Potri.013G098550 ID=Potri.013G098550.1.v4.1 annot-version=v4.1 MASSSMQKAASSSYSPPQWKYDVFLSFRGKDTRNNFTSHLYSNLEQRGIDVYLDDRGLERGKTIEPALWQAIEDSRFSIVVFSRDYASSPWCLDELVKIV QCMKEMGHTVLPVFYDVDPSEVADQKGNYKKAFIEHKEKHSGNLDKVKCWSDCLSTVANLSGWDVRNRDESQSIKKIVEYIQCKLSFTLPTISKNLVGID SRLKVLNEYIDEQANDTLFIGICGMGGMGKTTVARVLYDRIRWQFGGSCFLANVREVFAEKDGLCRLQEQLLSEISMELPTARDSSRRIDLIKRRLRLKK VLLILDDVDDEEQLQMLAAEHGTFGPGSRIIITSRNKHVLDSHGVTRIYEAEKLNDKDALILFSWKAFKRDQPAEDLSELSKQVVGYANGLPLALEVIGS FLHKRGLREWKSAIDRMNDIPDRKIIDVLRISFDGLHELEKKIFLDIACFLKGMKKDRITRLLDSCGFHADIGMQALIEKSLIRVSRDEIRMHNLLQKMG EEIVRCESPEEPGRRSRLCTYKDVCDALKDSTGKIESIFVDLPKAKEAPWNMTAFSKMTKLRLLKIHNVDLSEGPEYLSNELRFLEWHAYPSKSLPACFR LDDLVELYMSCSSIEQLWCGCKISVNLKIINLSNSLYLTNTPDFTGIPNLESLILEGCASLSEVHPSFGRHKKLQFVNLVNCNSFRILPSHLEMESLKVC TLNGCSKLDKFPDIVGNMNCLRELRLDGTAIAELSSSFHCLAGLVLLSMNSCGNLESIPSSISGLKSLKRLDVSDCSELTNIPENLGEVESLEEFDASGT SIRQPPASIFLLKNLKVLSFNGCKRIAVNLTDQVLPSLSGLCSLEELDLRACNLGEGAVPEDIGCLSSLRSLNLSRNNFVSLPKSINQLSRLEKLALNDC VMLESLPEVPLKVQKVKLDGCLRLKEIPDPIKLSSLKRSEFKCLNCWELYKHNGQNNMGLNMLEKYLQGSSPRPGFSIVVPGNEIPGWFTHQSKESSIRV QVPSNYIDGWMGFAACVAFSAYGKSPLFCHFKVDGKENYPSPMYIGCNSMQALSDHLWLFYLSFDYLKELKERENEAYTELELSFHSYERGVKVKNCGVR LVNSPYTPSWQSPTGRLIVASKEAASSYIDSLANSSYCQWMHDVFFSFRGEHTSNNFTHLYTALVQRGIIRGDTELEYLRVIESSLLRDIKESGLSIIKF ARDYACSAWWFDELVKIVGFMKKMKSDTVFPVSAVSYNVEQSRVDAQAESYTIVFDKDEEDFSEDMEKVRRWMDILTEVAISSGSESSKRVNGMDWPVGN RFHGTDMEFLLNFRKKVLEENELDIDFEFDVTLEEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.013G098550 [exp]	0	1
AT1G28760			Uncharacterized conserved prot...		Potri.019G039300 [exp]	15.00	0.7290
AT5G05800			unknown protein		Potri.005G153700 [exp]	17.94	0.8029
					Potri.003G013400 [exp]	22.58	0.8204
AT2G39910			ARM repeat superfamily protein...		Potri.008G063500 [exp]	39.19	0.7254
AT5G27550			P-loop containing nucleoside t...		Potri.005G031801 [exp]	41.27	0.7999
AT3G25930			Adenine nucleotide alpha hydro...		Potri.010G123300 [exp]	45.29	0.7221
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	50.75	0.6948	NTR1.4
					Potri.002G001250 [exp]	54.03	0.7365
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.006G164000 [exp]	57.60	0.7350
					Potri.012G030301 [exp]	59.69	0.7621

Compare expression of checked genes

Potri.013G098550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.