Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71410 1177 / 0 ARM repeat superfamily protein (.1) AT1G22870 1169 / 0 Protein kinase family protein with ARM repeat domain (.1) AT2G40730 88 / 1e-17 CTEXP cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) AT3G61960 81 / 2e-15 Protein kinase superfamily protein (.1.2) AT3G44200 75 / 2e-13 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 74 / 2e-13 ATNEK5 NIMA-related kinase 5 (.1) AT3G63280 72 / 1e-12 ATNEK4 NIMA-related kinase 4 (.1.2) AT5G28290 70 / 4e-12 ATNEK3 NIMA-related kinase 3 (.1) AT1G54510 68 / 3e-11 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G04810 67 / 3e-11 ATNEK2 NIMA-related kinase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G090500 [exp] 94 / 1e-19 AT2G40730 1144 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Potri.019G059200 [exp] 92 / 1e-18 AT2G40730 1172 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Potri.014G107000 [exp] 77 / 4e-14 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G181000 [exp] 77 / 5e-14 AT3G61960 592 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G218100 [exp] 72 / 2e-12 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.002G049400 [exp] 71 / 3e-12 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.006G056300 [exp] 70 / 6e-12 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.013G039000 [exp] 69 / 7e-12 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.003G205400 [exp] 69 / 7e-12 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007901 [exp] 962 / 0 AT1G22870 912 / 0.0 Protein kinase family protein with ARM repeat domain (.1) Lus10030346 [exp] 957 / 0 AT1G22870 915 / 0.0 Protein kinase family protein with ARM repeat domain (.1) Lus10029025 [exp] 86 / 1e-16 AT2G40730 1221 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Lus10011301 [exp] 82 / 1e-15 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10034240 [exp] 82 / 1e-15 AT2G40730 1216 / 0.0 cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1) Lus10040499 [exp] 81 / 3e-15 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10013338 [exp] 77 / 4e-14 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001857 [exp] 76 / 1e-13 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10042632 [exp] 76 / 1e-13 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10030182 [exp] 70 / 5e-12 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G098700.1 pacid=42811358 polypeptide=Potri.013G098700.1.p locus=Potri.013G098700 ID=Potri.013G098700.1.v4.1 annot-version=v4.1 ATGTCTCTCAACATGAAAACATTTACACAGGCGCTAGCCAAAACGGCAGCGGTCATTGAAAAAACCGTACAAACCACCGTCCAAGAAGTAACCGGTCCCA AACCCTTGCAAGACTACGATCTCCTTCACCAGATCGGCTCAGCTGGACCCGGTCTCGCTTGGAAGCTCTATTCTGCCAAGGCAGCGCGTGAGTCAACGCG CACACACCAGTACCCGACGGTTTGCGTGTGGGTTCTGGATAAGAAGGCGTTGTCGGAAGCACGAGCGCGTGCGGGTTTAACGAAGGTGGCGGAGGATACG TTCTTGGACGTGATTCGAGCGGATGCTGCGAGGTTGGTTAGGATTAGGCATCCGGGAGTGGTTCATGTTGTGCAGGCTTTGGATGAGAATAAGAATGCGA TGGCGATGGTGACGGAACCGCTTTTCGCGTCGGTGGCGAATGCGATTGGGAATTTGGAGAATGTGGGGAAAGTGCCTAAGGAGCTCAAGGGAATGGAAAT GGGCTTGTTAGAGGTGAAGCATGGCTTGCTACAAATTGCAGAATCCTTGGACTTCCTCCATAACAATGCACATCTCATTCACAGGGCTATATCTCCTGAG AATATTCTAATTACTTCAAGTGGAGCGTGGAAGCTTGGTGGATTTGGTTTCGCAATAACAACAGATCAGGCTTCAGGCGATTTGGCTAGTTCCCAGGCCT TTCATTATGCTGAATATGATGATGAGGACTCTATGCTGCCCCTTCAGCCATCGCTGAATTACATTGCACCTGAACTAGTTAGGAGCAAAGCACCTTCAGC TGGATGCTCTTCTGATATTTTTAGTTTTGGATGCCTTGCCTACCAACTGATTGCTCACAAGCCTTTGTTTGACTGCCACAACAATGTGAAGATGTACATG AATACCTTGAATTACTTATCCAGTGCAGCTTTCTCCTCTATTCCACCAGAATTAGTTCCTGACCTGCAGAAGATGCTCTCTGCAAATGAATCTTTCAGGC CAACAGCTATGGATTTTACAGGTTCTCCTTTTTTCCGGAATGACACGAGGCTGCGTGCTCTTCGCTTCCTAGACCACATGCTTGAAAGAGATAACATGCA GAAGTCTGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGACTTTGACACCCGTGTGCTGCGATATAAGGTTCTTCCACCCTTATGTGCTGAACTTAGG AATATGGTCATGCAACCAATGATTCTCCCCATGGTTCTCACCATTGCAGAGTCCCAGGATAAAATTGACTTTGAGCTATCAACACTTCCAGCTCTCATTC CTGTCCTCAGTACTGCTGCAGGCGAGACACTACTGCTGCTTGTGAAGCATGCTGAACTTGTTATCAACAAGACTAGTCAGGATAACTTAATATCCCATGT TCTGCCCTTGCTCGTTCGAGCTTATGATGATACGGATCCGCGCATTCAAGAGGAAGTTTTGAGAAAATCATCCTTTCTTGCCAAGCAACTAGATGTTCAG CTGGTGAAACAAGCAATTTTGCCTCGTGTTCATGGATTAGCTCTCAAAACAACTGTTGCTGCGGTAAGAGTCAATGCTCTGCTATGCTTTGGAGATCTTG TTAGCACACTCGATAAACATGCTATTTTAGATATCTTGCAAACAATTCAACGTTGTACGGCAGTTGATCGTACTCCTCCAACCCTTATGTGTACCCTTGG TGTTGCAAACTCAATTCTCAAGCAGCATGGAGTAGAATTTGTTACGGAGCATGTTCTTCCACTTCTCACACCTCTGCTCACTGCTCAGCAATTGAATGTT CAGCAGTTTGCTAAGTATATGCTCTTTGTGAAGGATATCCTCAGGATGATAGAAGAAAAAAGAGGAGTTACAGTAACAGATTCTGGAATTCCAGAGGTGA AGTCATCATCTTTTCCCAATGGGATTCAGCCTCAAGCCTCAAGCAAAACAAGTGGTACTGTTGCACCAGCAGCAAAGGGTAGCGCCTCATGGGATGAGGA TTGGGGTCCTGTCTCAAAAGGATCTGCCACTGCACATCGGGCTTTAGCAAGCAACTCATCACCTACTCCATCTATTTCTGCTAATCAGCCAGTTCAATTA ACATTTTTGCAATCAGAATCTCCCATGACATCTGCAGTTTCCAGTAGGCAAACAGCTGTATCATGCCCTCCAATCGATATAGAATGGCCTCCACGGGCAT CTTCAACTGTAACTCAGTTAGATATTGGAAACAAGCAAATGGACGCAGGAGCAACATCCACTTCAAGTTTTAATGAAATAGATCCTTTTGCTGATTGGCC TCCAAGACCAAGTGGCACTTCTAGTGGTTCTGGGGCTTCTAACAATGGCACAACAGGACTGCAGCCAAATAGTTACAGTTCGAATTTGATCACAAACACA CCCGACATTATGAATTTCCAGAACAAAGGAAATATCAGCTGGGCCTTCAACAACCAAAGTTCATTGGATCCATTGAAACCAAATCAAGGCACCTCTGCTG TGAATTCTGGTAGTAGTTTGAATAGTGGTCCTAATCCCCAAAGCTCTATTGGTTTCTTGAAACAGAACCAGAATACATCAACTCTGGGTTCTTATAACCA CACAAAGCCAACGGATCTCGGATCCATATTTGGTTCCAGCAAGAATGAGCAGACTGCAATAAAACTTGCTCCACCCCCATCAAGTGCCGTGGGCAGAGGA AGAGGAAGAGGAAGAGGGAGGGGTGGCACATCAACCTTGAGATCTAGCCATGCAAAGCCACAATCTGAACAACCCCCTCTTCTAGATTTGCTATAA
AA sequence Show only first row Show all	>Potri.013G098700.1 pacid=42811358 polypeptide=Potri.013G098700.1.p locus=Potri.013G098700 ID=Potri.013G098700.1.v4.1 annot-version=v4.1 MSLNMKTFTQALAKTAAVIEKTVQTTVQEVTGPKPLQDYDLLHQIGSAGPGLAWKLYSAKAARESTRTHQYPTVCVWVLDKKALSEARARAGLTKVAEDT FLDVIRADAARLVRIRHPGVVHVVQALDENKNAMAMVTEPLFASVANAIGNLENVGKVPKELKGMEMGLLEVKHGLLQIAESLDFLHNNAHLIHRAISPE NILITSSGAWKLGGFGFAITTDQASGDLASSQAFHYAEYDDEDSMLPLQPSLNYIAPELVRSKAPSAGCSSDIFSFGCLAYQLIAHKPLFDCHNNVKMYM NTLNYLSSAAFSSIPPELVPDLQKMLSANESFRPTAMDFTGSPFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDTRVLRYKVLPPLCAELR NMVMQPMILPMVLTIAESQDKIDFELSTLPALIPVLSTAAGETLLLLVKHAELVINKTSQDNLISHVLPLLVRAYDDTDPRIQEEVLRKSSFLAKQLDVQ LVKQAILPRVHGLALKTTVAAVRVNALLCFGDLVSTLDKHAILDILQTIQRCTAVDRTPPTLMCTLGVANSILKQHGVEFVTEHVLPLLTPLLTAQQLNV QQFAKYMLFVKDILRMIEEKRGVTVTDSGIPEVKSSSFPNGIQPQASSKTSGTVAPAAKGSASWDEDWGPVSKGSATAHRALASNSSPTPSISANQPVQL TFLQSESPMTSAVSSRQTAVSCPPIDIEWPPRASSTVTQLDIGNKQMDAGATSTSSFNEIDPFADWPPRPSGTSSGSGASNNGTTGLQPNSYSSNLITNT PDIMNFQNKGNISWAFNNQSSLDPLKPNQGTSAVNSGSSLNSGPNPQSSIGFLKQNQNTSTLGSYNHTKPTDLGSIFGSSKNEQTAIKLAPPPSSAVGRG RGRGRGRGGTSTLRSSHAKPQSEQPPLLDLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	0	1
AT3G07660			Kinase-related protein of unkn...		Potri.002G217000 [exp]	2.44	0.7693
AT3G60860			SEC7-like guanine nucleotide e...		Potri.014G070600 [exp]	2.64	0.8275
AT5G27970			ARM repeat superfamily protein...		Potri.013G035100 [exp]	2.82	0.7787
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	4.47	0.7598	GN.2
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	5.47	0.7827
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Potri.005G099800 [exp]	9.38	0.7656
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	10.81	0.7370
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	11.83	0.7123
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Potri.018G072600 [exp]	12.96	0.7689
AT1G20760			Calcium-binding EF hand family...		Potri.005G253000 [exp]	13.74	0.7065

Compare expression of checked genes

Potri.013G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.