Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71420 772 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 411 / 2e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 406 / 2e-128 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 403 / 2e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 401 / 2e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 395 / 3e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 391 / 9e-125 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G15130 388 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14850 387 / 3e-124 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 389 / 9e-124 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 439 / 2e-141 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 429 / 3e-139 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G085800 [exp] 423 / 5e-138 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 424 / 8e-135 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 417 / 1e-134 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 408 / 2e-132 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 412 / 1e-131 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 410 / 3e-131 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 403 / 6e-129 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009437 [exp] 863 / 0 AT1G71420 753 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 433 / 5e-139 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006073 [exp] 419 / 2e-137 AT1G71420 471 / 1e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 422 / 6e-135 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 408 / 4e-131 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012971 [exp] 401 / 2e-129 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 395 / 6e-126 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001483 [exp] 391 / 7e-126 AT5G39680 691 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006123 [exp] 390 / 2e-125 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 392 / 7e-125 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.013G098800.1 pacid=42811634 polypeptide=Potri.013G098800.1.p locus=Potri.013G098800 ID=Potri.013G098800.1.v4.1 annot-version=v4.1 ATGCCAAGGCCCACCACCGGCGGGCGGTACCTCTTCCTCCGAAGCTTCAGCTCCAGCATTCATCCCCAACTCCCCAACTCAACCCCGGAAGCCACCGATC TTTTCAACAAGGTGCGGGTGCTCTCCACCCGCGGCAACATCAAAGAAGCACTCTCCTTCTTCTACAGCACACCACAGCTAAACCAGTCTCAACAAACCTA TGCCACACTCTTCCATGCCTGTGCACGCCATGGGAACCTTAAACAAGGCCAATATTTACACCAACATATGATTTCCGAAAACCACAAAAACCCACAAGAC CTCTTTGTAACTAACCATCTTATTAATATGTATGCAAAATGTGGTGACCTGGACCGTGCACGCCAAGTGTTCGATGAAATGGGTCGCAGAAATGTGGTGT CTTGGACCGCGCTCATTTCTGGGTATGCCCAACATGGGCGAAGTTATGAGTGCTTTTCCTTGTTTTCTGATATGTTGGTGGATTGTTATCCGAATGAGTT TGCTTTTGCGAGTGTGATTATTTCTTGTGATTACGTTTGTGGCAAGCAAGTGCACGCCCTCGCGTTGAAAATGGGGTTGATCGCTAGTGTTTATGTGGGG AATGCTCTTATTACAAGATATAGCAAAAGTTGTGAGGATAATTTTGTCGGTTATGGTAGCGAGGCCTGCCGCGTTTTTGAGTCAATGGAGTTTCGTAATC TTGTTTCTTGGAATTCAATGATTGCCGCGTTTCAACATTGGAAACTTGGGGATCTAGCTATTGGAATTTTTTGCCAAATGCATAGTGGTGGAGTGGAGTT TGATGGTGCTACTTTGGTCAGTGTGCTTTCTTCCTTGAGTGAGAGTTATGATGGCGATAATGCTGACGTGGGTCTGAAGGGTTGTTTTCAATTGCACTGT GTTAGTATCAAACGTGGGTTTATGTTGAAAATTGAATTGGCAACTGCATTGGTGAAAGCTTATTCGGATCTTGGAGGGAAGGTTTCTGATTGTTACAGGC TCTTCATGGAGACAAGTAGTCGGGATCTTTTTTTGTGGACTGGCATTATAACAGCATTTGCTGACCGTGAACCAGAAGAAGCACTTCTCCTCTTTCGTCA GTTGTACAGGGAGGGCTTAGCACCCGATTGGTGTACATTTTCAATTGTGTTAAAAGCTTGTGCTGGTTTTGTGACTGAAAGGCATGCTTTGGCAGTTTAT TCTCAAGTAGTTAAAGCTGGGTTTGAGGATGACAGAGTGCTTGCAAATACCTTGATCCATGCCTATGCTAGGTGTGGCTCCATTTCTTTTTCGAAGCAAG TTTTCGATAAAATGAGATCTCGTGATGTTGTTTCCTGGAACTCGATGATCAAGGCTTATGCTTTACATGGACAAGCTAAGGAGGCATTGCATCTCTTCTC AGAGATGAATGTCAGACCTGACTCTGCAACGATGGTTGCTCTCCTCTCAGCATGCAGCCATGCAGGATTAGTGGAAGAAGGAATTAACATCTTTGACTCA ATGTCCATGAATCATGGTGTTTCTCCACAACTTGATCACTATGCCTGCATGGTGGATATTCTAGGTCGAGCTGGGCTTCTTTTGGAGGCAGGGGAGCTTA TAAGTAGAATGCCAATGAAGCCTGATTCAGTGGTTTGGAGTGCACTGCTTAGCTCATGTAGGAAATATGGCGAGACTCAGTTGGCAAAATTAGCAGCAGA TAAACTGAAAGAGTTGGAACCTGGAAATTCATTAGGCTATGTACAGATTTCAAACATTTACTGCTCTGGAGGTAGTTATAATGAAGCAGGGTTGATTAGG GATGAAATGAATGGCTCTAGAGTAAGAAAAGAACCTGGTTTAAGCTGGATAGAGATTGAGAATCGAGTACATGAGTTTGCCTCTGGAGGCAGGCGTCATC CTCAAAGAGAGGCCATATATGCTAAACTTTATTCACTGATTGGGCAGTTAAAGGGGGTAGGCTATGTGCCGGAGACAAGCTTGGCTTTGCAAGACATAGA GGAGGAGCATAAACAAGAGCAGTTGTACCACCATAGTGAGAAGCTGGCCCTGGTGTTTGCTCTGATGAGTGAAGGTAGTTTGTGTTGTGGTGGAGGTGTA ATAAGAATCGTGAAGAACATCCGAATTTGTGTGGACTGTCACAACTTCATGAAGTTAGCATCAGATCTTCTCCAAAAGGAGATTGTGGTGAGAGACTCAA ATCGTTTCCACCATTTCAAAAATAGGATGTGCTCTTGCAATGACTATTGGTAA
AA sequence Show only first row Show all	>Potri.013G098800.1 pacid=42811634 polypeptide=Potri.013G098800.1.p locus=Potri.013G098800 ID=Potri.013G098800.1.v4.1 annot-version=v4.1 MPRPTTGGRYLFLRSFSSSIHPQLPNSTPEATDLFNKVRVLSTRGNIKEALSFFYSTPQLNQSQQTYATLFHACARHGNLKQGQYLHQHMISENHKNPQD LFVTNHLINMYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVDCYPNEFAFASVIISCDYVCGKQVHALALKMGLIASVYVG NALITRYSKSCEDNFVGYGSEACRVFESMEFRNLVSWNSMIAAFQHWKLGDLAIGIFCQMHSGGVEFDGATLVSVLSSLSESYDGDNADVGLKGCFQLHC VSIKRGFMLKIELATALVKAYSDLGGKVSDCYRLFMETSSRDLFLWTGIITAFADREPEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTERHALAVY SQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEMNVRPDSATMVALLSACSHAGLVEEGINIFDS MSMNHGVSPQLDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADKLKELEPGNSLGYVQISNIYCSGGSYNEAGLIR DEMNGSRVRKEPGLSWIEIENRVHEFASGGRRHPQREAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHHSEKLALVFALMSEGSLCCGGGV IRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSCNDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	0	1
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	1.00	0.9308
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	2.44	0.8984
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	2.82	0.9034
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	3.16	0.8880
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.001G102501 [exp]	5.09	0.8770
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	5.47	0.8879
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	6.48	0.8748
AT2G41020			WW domain-containing protein (...		Potri.006G032200 [exp]	7.41	0.8306
AT5G15340			Pentatricopeptide repeat (PPR)...		Potri.017G087600 [exp]	7.74	0.8261
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	7.93	0.8846

Compare expression of checked genes

Potri.013G098800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.