Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33590 629 / 0 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 559 / 0 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 533 / 0 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 526 / 0 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 503 / 1e-176 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 476 / 9e-166 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 230 / 1e-68 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 174 / 5e-50 Leucine-rich repeat (LRR) family protein (.1) AT3G56370 177 / 7e-48 Leucine-rich repeat protein kinase family protein (.1) AT3G20820 166 / 5e-47 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098900 [exp] 882 / 0 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 231 / 4e-69 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 209 / 2e-60 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 201 / 3e-57 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117700 [exp] 197 / 3e-56 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G017500 [exp] 176 / 1e-50 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.018G045500 [exp] 182 / 1e-49 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 179 / 1e-48 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G269800 [exp] 169 / 4e-48 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002936 [exp] 628 / 0 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002937 [exp] 626 / 0 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041064 [exp] 502 / 7e-177 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10041010 [exp] 221 / 1e-65 AT5G23400 557 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041013 [exp] 216 / 6e-64 AT5G23400 552 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10006159 [exp] 199 / 2e-61 AT1G33590 179 / 1e-54 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 201 / 5e-58 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10030526 [exp] 186 / 6e-51 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031824 [exp] 176 / 2e-50 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10012877 [exp] 184 / 3e-50 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G098850.1 pacid=42810938 polypeptide=Potri.013G098850.1.p locus=Potri.013G098850 ID=Potri.013G098850.1.v4.1 annot-version=v4.1 ATGAAGCTCCTCTCTCTTCTCCTCTTCTCAATGCTGCTGCTTATCCTCTGTTCTATCAAGCACACATCAGCTGCCTGCCACGTCGATGATCATGCGGGTC TTTTGGCATTCAAGTCGGGTATAACCCACGATCCATCAGGCATGCTTAGCTCGTGGAAACCGGGCACCGATTGCTGCTCTTGGGGAGGCATTACATGCCT CGACAAGATCCGGGTCAACACCGTATGGCTTACCGGCAACCCGGACAAACCGAATGGATATTTAACGGGTTCAATCTCACCCTCTCTCGTCAAAGTTCAA AACCTTGATGGTATTTATTTTTTTGATCTTAACATTACGGGTCCATTCCCGGATGTTTTATTCCGGTTACCAAAGCTCAAATACATTTACATAGAAAACA ACAAGCTCTCGGGCCCGTTACCTTCTGATATAGGCAAGATGACCCAACTTGACGTTCTCAGTTTATCAGGCAACCAGTTCACTGGGTTAATACCGAGCTC AATCGCCGAGTTGACTCAGCTGAGTCAGCTTAAACTTGGTAACAATCTACTCACTGGCCCAATTCCTCTTGGAATCAGCAAGCTAACAGACCTGTCTTTC TTGAGTCTACAAAATAACAAACTCACGGGTACCATACCTGATTTTCTCTCATCACTCACAAACCTTAGGATTCTTCGACTTTCACATAACAAATTCTCTG GTAAAATACCAAATTCAATAGCCTCCCTGGCTCCGAACCTTGCTTACCTTGAACTAGGCCACAATGCGTTGACAGGAACAATCCCAAGTTTTCTTGGAAA GTTCAAGGCACTAGACACCCTTGATCTTTCTTGGAACAACTTCACAGAAACTGTCCCAAAAAGTTTTGGAAACTTGACAAAAATATTCAATCTTGATCTC TCTCACAACTCTCTTGTAGACCCATTTCCTGTAATGAATGTTAAAGGCATCGAGTCACTTGATTTGTCTTACAATAAGTTCCACCTTGAGAAAATACCGA ACTGGGTCACTTCGTCTCCCATCATTTACTCTCTCAAGCTTGCCAAATGCGGGATCAAGATGAACTTGAATGATTGGAAGCCAAAGGAGACGTATTTCTA TGACTACATTGATCTTTCCTACAATGAAATATCAGGCAGTCCAGTTTGGTTGATGAATAAGACTGATTATTTGGTTGGTTTTTGGGCTTCAGGTAATAAG TTGAAATTTGATCTGGGGAGTTTAAAGATTGTTGGGACATTGAAGAACCTGGAGTTGTCAAGAAATCTGGTTTATGGTAAGGTGCCCAAGTCAGTTTCTG GGCTGGAAAGTTTGAATTTGAGTTACAATCATCTCTGTGGACAGCTTCCATCAACAAAATTCCCCGCTAGTGCATTTGTCGGCAATGACTGTCTGTGTGG TGCTCCACTACCTCCTTGCAAAGTGAAGGGGGAGTAA
AA sequence Show only first row Show all	>Potri.013G098850.1 pacid=42810938 polypeptide=Potri.013G098850.1.p locus=Potri.013G098850 ID=Potri.013G098850.1.v4.1 annot-version=v4.1 MKLLSLLLFSMLLLILCSIKHTSAACHVDDHAGLLAFKSGITHDPSGMLSSWKPGTDCCSWGGITCLDKIRVNTVWLTGNPDKPNGYLTGSISPSLVKVQ NLDGIYFFDLNITGPFPDVLFRLPKLKYIYIENNKLSGPLPSDIGKMTQLDVLSLSGNQFTGLIPSSIAELTQLSQLKLGNNLLTGPIPLGISKLTDLSF LSLQNNKLTGTIPDFLSSLTNLRILRLSHNKFSGKIPNSIASLAPNLAYLELGHNALTGTIPSFLGKFKALDTLDLSWNNFTETVPKSFGNLTKIFNLDL SHNSLVDPFPVMNVKGIESLDLSYNKFHLEKIPNWVTSSPIIYSLKLAKCGIKMNLNDWKPKETYFYDYIDLSYNEISGSPVWLMNKTDYLVGFWASGNK LKFDLGSLKIVGTLKNLELSRNLVYGKVPKSVSGLESLNLSYNHLCGQLPSTKFPASAFVGNDCLCGAPLPPCKVKGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33590			Leucine-rich repeat (LRR) fami...		Potri.013G098850 [exp]	0	1
AT1G33590			Leucine-rich repeat (LRR) fami...		Potri.013G098900 [exp]	1.00	0.8896
AT5G48920		TED7	tracheary element differentiat...		Potri.007G108100 [exp]	5.09	0.8158
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Potri.010G111000 [exp]	11.48	0.8640	MLP43.1
					Potri.004G112600 [exp]	12.60	0.8572
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Potri.011G136300 [exp]	13.78	0.8196
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.005G211800 [exp]	17.32	0.8562
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	22.04	0.8481
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G061800 [exp]	23.62	0.7150	COL3.2
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114375 [exp]	30.85	0.8491
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.005G160300 [exp]	31.63	0.8362	PUP1.1

Compare expression of checked genes

Potri.013G098850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.