Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33590 582 / 0 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 519 / 0 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 494 / 3e-173 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 494 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 490 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 484 / 3e-169 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 204 / 5e-59 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 158 / 1e-43 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G56370 157 / 4e-41 Leucine-rich repeat protein kinase family protein (.1) AT5G12940 149 / 1e-40 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098850 [exp] 838 / 0 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 204 / 7e-59 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 196 / 1e-55 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G117700 [exp] 182 / 1e-50 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 172 / 1e-46 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 150 / 9e-41 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.018G045500 [exp] 155 / 1e-40 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 152 / 2e-39 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G017500 [exp] 146 / 2e-39 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002937 [exp] 587 / 0 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002936 [exp] 585 / 0 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041064 [exp] 474 / 4e-166 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10041010 [exp] 208 / 1e-60 AT5G23400 557 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041013 [exp] 206 / 4e-60 AT5G23400 552 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 184 / 9e-52 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10006159 [exp] 169 / 3e-50 AT1G33590 179 / 1e-54 Leucine-rich repeat (LRR) family protein (.1) Lus10030526 [exp] 172 / 3e-46 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 169 / 6e-45 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031824 [exp] 160 / 9e-45 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G098900.1 pacid=42811644 polypeptide=Potri.013G098900.1.p locus=Potri.013G098900 ID=Potri.013G098900.1.v4.1 annot-version=v4.1 ATGAAGCTCCTCTCTCTTCTCCTCTTCTCAATGCTGCTGCTTATACTCCGTTCTTTCAAGCACGCATCAGCTGCCTGCCACGTCGATGATCATGCGGGTC TCTTGGCATTCAAGTCGGGTATAACCCACGATCCATCAGGCATGCTCAGCTCGTGGAAACCGGGCACCGATTGCTGCTCTTGGGGAGGCATTTCCTGCCT CGACAAGATCCGGGTCAACACCGTATCGCTTTACGGCAACCCGGACAAACCGAATGGATATTTAACGGGTTCAATCTCACCCTCTCTCGTCAAGCTTCAA AGCCTTGACGGTGTTTATTTTAGAGATCTTAACATTACGGGTCCATTCCCGGATGTTTTACTCCGGTTACCAAAGCTCAATTACATTTACATAGAAAACA ACAAGCTCTCGGGTCCGTTACCTTCTGATATAGGCAAGATGACCCAACTTTACACTCTCAGTATATCAGGCAACCAGTTCACTGGGTTAATACCGAGCTC AATCGCCGAGTTGACTCAGCTGAGTCAGCTTAACCTTGGTAACAATCTACTCACTGGCCCAATTCCTCTTGGAATCAGCAAGCTAACAGGCCTGTCTTTC TTGAGTCTACAAAATAACAAACTCACGGGTACCATACCTGATTTTCTCTCATCACTCACAAACCTTAGGATTCTTCGACTTTCACATAACAAATTCTCTG GTAAAATACCAAATTCAATAGCCTCCCTGGCTCCAAAACTTGCTTACCTTGCACTAGGCCACAATGCGTTGACAGGAACAATCCCAAGTTTTCTTGGAAA GTTCAAGGCACTAGACACCCTTGATCTTTCTTGGAACAACTTCACAGAAACTGTCCCAAAAAGTTTTGGAAACTTGACAAAAATATTCAATCTTGATCTC TCTCACAACTCTCTTGTAGACCCATTTCCTGTAATGAATGTTAAAGGCATCGAGTCACTTGATTTGTCTTACAATGAGTTCCACCTTGAGAAAATACCGA ACTGGGTCACTTCGTCTCCCATCATTTACTCTCTCAAGCTTGCCAAATGCGGGATCAAGATGAACTTGAATGATTGGAAGCCAAAGGAGACGTATTTCTA TGACTACATTGATCTTTCCTACAATGAAATATCAGGCAGTCCAGTTTGGTTGATGAATAAGACAGATTATTTGGTTGGTTTTTGGGCTTCAGGGAATAAG TTGAAATTTGATCTGGGGAGTTTAAAGATTGTTGGGACATTGAAGAACCTGGAGTTGTCAAGAAATCTGGTTTATGGTAAGGTGCCCAAGTCAGTTTCTG GGCTGGAAAGTTTGAATTTGAGTTACAATCATCTCTGTGGACAGCTTCCATCAACAAAATTCCCCGCTAGTGCATTTGTCGGCAATGACTGTCTGTGTGG TGCTCCACTACCTCCTTGCAAAGTGAAGGGGGAGTAA
AA sequence Show only first row Show all	>Potri.013G098900.1 pacid=42811644 polypeptide=Potri.013G098900.1.p locus=Potri.013G098900 ID=Potri.013G098900.1.v4.1 annot-version=v4.1 MKLLSLLLFSMLLLILRSFKHASAACHVDDHAGLLAFKSGITHDPSGMLSSWKPGTDCCSWGGISCLDKIRVNTVSLYGNPDKPNGYLTGSISPSLVKLQ SLDGVYFRDLNITGPFPDVLLRLPKLNYIYIENNKLSGPLPSDIGKMTQLYTLSISGNQFTGLIPSSIAELTQLSQLNLGNNLLTGPIPLGISKLTGLSF LSLQNNKLTGTIPDFLSSLTNLRILRLSHNKFSGKIPNSIASLAPKLAYLALGHNALTGTIPSFLGKFKALDTLDLSWNNFTETVPKSFGNLTKIFNLDL SHNSLVDPFPVMNVKGIESLDLSYNEFHLEKIPNWVTSSPIIYSLKLAKCGIKMNLNDWKPKETYFYDYIDLSYNEISGSPVWLMNKTDYLVGFWASGNK LKFDLGSLKIVGTLKNLELSRNLVYGKVPKSVSGLESLNLSYNHLCGQLPSTKFPASAFVGNDCLCGAPLPPCKVKGE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33590			Leucine-rich repeat (LRR) fami...		Potri.013G098900 [exp]	0	1
AT1G33590			Leucine-rich repeat (LRR) fami...		Potri.013G098850 [exp]	1.00	0.8896
					Potri.014G065500 [exp]	3.74	0.7916
AT5G48920		TED7	tracheary element differentiat...		Potri.007G108100 [exp]	4.24	0.7733
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.005G035800 [exp]	9.16	0.7488	HAP5.6
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Potri.007G011600 [exp]	11.40	0.7744
AT1G03700			Uncharacterised protein family...		Potri.013G131700 [exp]	18.97	0.7435
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.017G044900 [exp]	20.97	0.7663
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.006G193700 [exp]	27.05	0.7830
AT5G49560			Putative methyltransferase fam...		Potri.007G025600 [exp]	28.77	0.7562
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	37.69	0.7204

Compare expression of checked genes

Potri.013G098900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.