Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14060 91 / 3e-23 GCK domain-containing protein (.1) AT5G02210 66 / 8e-14 GCK domain-containing protein (.1) AT5G57570 58 / 4e-11 GCK domain-containing protein (.1) AT5G57640 57 / 3e-10 GCK domain-containing protein (.1) AT1G23201 50 / 5e-08 unknown protein AT1G14048 44 / 2e-06 GCK domain-containing protein (.1) AT2G03230 40 / 0.0002 GCK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081400 [exp] 109 / 1e-30 AT1G14060 99 / 8e-27 GCK domain-containing protein (.1) Potri.013G109100 [exp] 106 / 1e-29 AT1G14060 100 / 5e-27 GCK domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030441 [exp] 93 / 1e-23 AT1G14060 97 / 3e-25 GCK domain-containing protein (.1) Lus10026621 [exp] 91 / 4e-23 AT1G14060 95 / 1e-24 GCK domain-containing protein (.1) Lus10037148 [exp] 72 / 2e-16 AT1G14060 79 / 4e-19 GCK domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07802 [poplar] [flax] GCK GCK domain
Representative CDS sequence Show only first row Show all	>Potri.013G099100.2 pacid=42812159 polypeptide=Potri.013G099100.2.p locus=Potri.013G099100 ID=Potri.013G099100.2.v4.1 annot-version=v4.1 ATGGGAGGTGTCTCTTCTTCAAGAACAAACCCTAATGATTCTAATAAATCCAACTTATCGCCGAGCTCATCAATTCCTGGCAATTCCCAGAATCATAATT CATCCACAACCTCATCAAACCTTCCGCTGCCCTCTTCAGGTTTATCAGTTGCCACTGAAACCCCTGAAGCATCAGATCAATCAAAGAAACCCACTGATGC CAATGGAGATGAAGGTCAAGAAGTGGAAGAGGAAGAGGAAGAGGAAGGAGAGTGCGGGTTTTGTGTGTACATGAAGGGAGGTGGGTGCAAAGATGCTTTT ATAGCATGGGAGGATTGCGTTAAAGAGGCAGAAGATAGCAATGAGGATATTGTGGAGAAGTGCCATGAGGTTACTCGGTCCTTGACAAAATGTATGGAAG CTCATGCCGATTATTACGAGCCAATTTTACAGGCAGAGAAGGCTGTCAAAGAAGAAGCTGTGAATGAGTTGAAGGAAAAGGCAGCGAAAGAATCAGAATC AAATGTGGCTGAAAAGGAAGCGGTGATAGTTGTGGATTGA
AA sequence Show only first row Show all	>Potri.013G099100.2 pacid=42812159 polypeptide=Potri.013G099100.2.p locus=Potri.013G099100 ID=Potri.013G099100.2.v4.1 annot-version=v4.1 MGGVSSSRTNPNDSNKSNLSPSSSIPGNSQNHNSSTTSSNLPLPSSGLSVATETPEASDQSKKPTDANGDEGQEVEEEEEEEGECGFCVYMKGGGCKDAF IAWEDCVKEAEDSNEDIVEKCHEVTRSLTKCMEAHADYYEPILQAEKAVKEEAVNELKEKAAKESESNVAEKEAVIVVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14060			GCK domain-containing protein ...		Potri.013G099100 [exp]	0	1
AT1G63980			D111/G-patch domain-containing...		Potri.003G132600 [exp]	1.41	0.7383
					Potri.005G247051 [exp]	1.73	0.7223
AT2G26200			S-adenosyl-L-methionine-depend...		Potri.006G225600 [exp]	2.00	0.7466
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	8.12	0.6889
AT3G26750			unknown protein		Potri.007G019800 [exp]	8.66	0.6425
					Potri.018G047150 [exp]	8.83	0.6491
AT3G53940			Mitochondrial substrate carrie...		Potri.016G103300 [exp]	10.72	0.7020
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Potri.014G067300 [exp]	11.00	0.6546	MAP1.3
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.018G071400 [exp]	13.78	0.6572	AKT1.2
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Potri.001G234800 [exp]	14.83	0.6277

Compare expression of checked genes

Potri.013G099100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.