Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HSDH.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19710 1425 / 0 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 1400 / 0 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1) AT5G21060 190 / 3e-53 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) AT3G02020 175 / 3e-46 AK3 aspartate kinase 3 (.1) AT5G13280 175 / 4e-46 AK1, AK-LYS1 aspartate kinase 1 (.1) AT5G14060 174 / 6e-46 CARAB-AK-LYS Aspartate kinase family protein (.1.2) AT3G18680 48 / 2e-05 Amino acid kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071700 [exp] 1672 / 0 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.004G196200 [exp] 197 / 2e-55 AT5G21060 509 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Potri.014G145700 [exp] 181 / 2e-48 AT5G14060 805 / 0.0 Aspartate kinase family protein (.1.2) Potri.002G236800 [exp] 177 / 6e-47 AT3G02020 845 / 0.0 aspartate kinase 3 (.1) Potri.005G057700 [exp] 49 / 1e-05 AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030339 [exp] 1456 / 0 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10041071 [exp] 1423 / 0 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10003073 [exp] 192 / 1e-53 AT5G21060 553 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10034077 [exp] 189 / 7e-53 AT5G21060 561 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10012568 [exp] 173 / 2e-45 AT5G14060 820 / 0.0 Aspartate kinase family protein (.1.2) Lus10041523 [exp] 171 / 1e-44 AT5G14060 824 / 0.0 Aspartate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [poplar] [flax] AA_kinase Amino acid kinase family CL0139 [poplar] [flax] GADPH_aa-bio_dh PF00742 [poplar] [flax] Homoserine_dh Homoserine dehydrogenase CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain CL0063 [poplar] [flax] NADP_Rossmann PF03447 [poplar] [flax] NAD_binding_3 Homoserine dehydrogenase, NAD binding domain CL0070 [poplar] [flax] ACT PF13840 [poplar] [flax] ACT_7 ACT domain
Representative CDS sequence Show only first row Show all	>Potri.013G099500.1 pacid=42811709 polypeptide=Potri.013G099500.1.p locus=Potri.013G099500 ID=Potri.013G099500.1.v4.1 annot-version=v4.1 ATGGCTCTCAGTGCTGCTTCGATCTCCCATAATAACACTCCACGCATTCTCTCCTCTTCTTCAAATACATTTTCTCAGCTCAACAACCAGAAGAAGATCT CTGCTTCTCCTCATTTCTCCCTTTTATCGCTTACTCCTCGCTCTTCTCTCTCCAGGAGTAGTTTTGTTTCCCAGTGGGGAAGAAGGGAGCCTTACTATTT GCACGGCCATGTCTCGTGTTCGGTTAAAGCTGTTTTGCTGGATGAATCCAAGGAAAAGCTTCACCTTCCGAAAGGTGATACGTGGTCGGTTCATAAGTTT GGTGGCACGTGTGTGGGAAGCTGGGAGAGAATTAAGAATGTAGCACAAATTATTGTTCAGGATAGCTCAGAGGGGAAATTGGTGGTTGTATCGGCGATGT CCAAGGTGACAGATATGATGTATGATCTCATAGACAAGGCGCAATCACGGGATGGTTCCTATGTATCTGCTGTAGATGCTGTTTTTGAAAAGCACAAATT AACAGCTATGGATCTTCTTGATGGTGATGATCTTGCTAGTTTTTTGTCCCGGTTGCATCATGATATTAATAACCTCAAAGCCATGCTTCGTGCAATATAC ATAGCTGGTCATGCAACCGAGTCCTTTTCTGACTTTGTTGTAGGACATGGGGAGTTGTGGTCTGCACAGATGTTGTCATACGTTGTTAGAAAGAACGGGC TAGATTGTGAATGGATGGATACAAGAGAAGTGCTTATAGTAAATCCCTCTGGTTCTAATCAAGTTGATCCTGATTTTGCGGAATCTGAAAAAAGACTTGA AGAATGGTTCTCTCGACATCCATCAAAGACAATAGTTGCGACTGGTTTCATAGCCAGTACGCAACAAAATATTCCCACAACATTGAAGCGGGATGGAAGT GACTTCTCTGCAGCTATAATGGGTGCCTTGGTGAGGGCTCGCCAAGTCACAATTTGGACAGATGTTGATGGGGTATACAGTGCAGACCCCAGAAAAGTTA GTGAGGCTGTAATACTAAGGACATTGTCTTACCAAGAGGCCTGGGAAATGTCCTATTTTGGGGCAAATGTCTTACATCCTCGCACTATTATGCCTGTGAT GCGATATGATATCCCCATTTTGATAAGGAATGTTTTTAACCTCTCTGCTCCCGGGACGATGATCTGCCGGCCTGCTGAGAATGAAGATGGCCAGAAATTG GAGTCGCTTGTCAAAGGTTTTGCAACTATTGACAATGTGGCTCTTGTGAATGTTGAGGGAACTGGAATGGCTGGTGTTCCTGGTACAGCTAGTGCCATTT TTGGTGCTGTGAAAGATGTGGGAGCTAATGTCATTGTTATATCCCAGGCTAGTAGCGAGCATTCTGTATGCTTTGCTGTACCTGAGAAGGAAGTAGCAGC TGTTGCTGAGGCTTTGAAGTCTAGATTTCATGAAGCTTTGAATGCTGGACGTCTTTCCCAGGTTGCAGTCATTCCAAATTGTAGCATTTTAGCAGCTGTT GGCCAGAAAATGGCTAGCACACATGGAGTCAGTGCAACTCTTTTCAATGCTCTGGCTAAGGCTAATATTAATGTCCGTGCCATAGCTCAAGGTTGCTCTG AATACAATATTACAGTTGTTATCAAGCGTGGAGATTGTATAAGAGCTTTAAGAGCTGTCCACTCGAGGTTTTATCTCTCGAAAACCACGATAGCAATGGG AATCATTGGACCTGGTTTGATTGGTGCCACATTACTAGACCAGCTTAGAGATCAGGCAGCAGTCCTTAAGGAAGATTTTAACATTGATTTGCGTGTTATG GGAATCACTGGCTCGAGAACAATGCTTTTGAATGATGTTGGAATTGACTTGTCAAGATGGAGAGAGCTTGTAAAGGATAAAGGTGAAGTGGCTGACCTGG AGAAATTCAGGCAACATGTGCATGGAAATCATTTTCTCCCAAATACTGTTTTGGTAGACTGTACAGCAGACTCTAATGTTGCAAGTTGTTATCATGATTG GTTGCGAAGAGGAATTCATGTAATCACCCCAAACAAAAAGGCAAATTCAGGACCACTTGATCAGTATTTGAAACTGAGAGCTCTTCAAAGGCAATCCTAT ACACATTACTTTTATGAGGCAACTGTTGGAGCTGGCCTTCCAATTATTAGCACTTTACGAGGTCTCCTTGAAACTGGGGATAAAATACTGCGCATTGAAG GAATTTTCAGTGGAACTTTGAGTTATATCTTCAACAATTTCAAAGGCACGCGAGCATTTAGTAACGTAGTGGCAGAAGCAAAGCAGGCAGGATATACTGA ACCTGATCCAAGGGATGATCTATCTGGAACAGATGTTGCCAGAAAGGTGATTATTCTTGCAAGAGAAACTGGTTTAAAGTTGGAGCTGTCTGATATCCCT GTTCAAAGTCTTGTCCCTGAACCACTGAGAGCTAGCGCATCTGCTGAAGAGTTTATGCAGCAGTTACCACAATTTGACAATGAAATGGCTAGGGCGAGAC AAGAGGCTGAGGATGCAGGGGATGTCTTGAGATATGTTGGGGTAGTGGATGCGGAGAGTCAACAAGGACTTGTTGAGTTGCGAAGATACAAGAAAGATCA CCCTTTTGCACAGCTTGCTGGTTCTGATAACATCATAGCTTTCACAACTACAAGGTATAAAAAACAGCCTCTGATTGTTCGCGGACCTGGTGCTGGGGCT CAAGTGACCGCCGGTGGAATATTCAGTGACATATTGCTACTGGCCTCTTATCTTGGTGCTCCATCATAA
AA sequence Show only first row Show all	>Potri.013G099500.1 pacid=42811709 polypeptide=Potri.013G099500.1.p locus=Potri.013G099500 ID=Potri.013G099500.1.v4.1 annot-version=v4.1 MALSAASISHNNTPRILSSSSNTFSQLNNQKKISASPHFSLLSLTPRSSLSRSSFVSQWGRREPYYLHGHVSCSVKAVLLDESKEKLHLPKGDTWSVHKF GGTCVGSWERIKNVAQIIVQDSSEGKLVVVSAMSKVTDMMYDLIDKAQSRDGSYVSAVDAVFEKHKLTAMDLLDGDDLASFLSRLHHDINNLKAMLRAIY IAGHATESFSDFVVGHGELWSAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFAESEKRLEEWFSRHPSKTIVATGFIASTQQNIPTTLKRDGS DFSAAIMGALVRARQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIMPVMRYDIPILIRNVFNLSAPGTMICRPAENEDGQKL ESLVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKDVGANVIVISQASSEHSVCFAVPEKEVAAVAEALKSRFHEALNAGRLSQVAVIPNCSILAAV GQKMASTHGVSATLFNALAKANINVRAIAQGCSEYNITVVIKRGDCIRALRAVHSRFYLSKTTIAMGIIGPGLIGATLLDQLRDQAAVLKEDFNIDLRVM GITGSRTMLLNDVGIDLSRWRELVKDKGEVADLEKFRQHVHGNHFLPNTVLVDCTADSNVASCYHDWLRRGIHVITPNKKANSGPLDQYLKLRALQRQSY THYFYEATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFKGTRAFSNVVAEAKQAGYTEPDPRDDLSGTDVARKVIILARETGLKLELSDIP VQSLVPEPLRASASAEEFMQQLPQFDNEMARARQEAEDAGDVLRYVGVVDAESQQGLVELRRYKKDHPFAQLAGSDNIIAFTTTRYKKQPLIVRGPGAGA QVTAGGIFSDILLLASYLGAPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Potri.013G099500 [exp]	0	1	HSDH.2
AT1G27360	SBP	SPL11	squamosa promoter-like 11 (.1....		Potri.002G142400 [exp]	3.16	0.8302
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.014G025800 [exp]	4.47	0.8689	ALC.2
AT1G80133			unknown protein		Potri.018G130700 [exp]	5.65	0.8204
AT4G24830			arginosuccinate synthase famil...		Potri.008G020200 [exp]	5.91	0.8340
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	6.00	0.8317
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	8.48	0.8468
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	10.39	0.8285
AT3G51070			S-adenosyl-L-methionine-depend...		Potri.005G118100 [exp]	11.74	0.7807
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	14.45	0.8118
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	18.33	0.8392

Compare expression of checked genes

Potri.013G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.