Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SGR2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31480 1155 / 0 SGR2 shoot gravitropism 2 (SGR2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072300 [exp] 1594 / 0 AT1G31480 1168 / 0.0 shoot gravitropism 2 (SGR2) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041056 [exp] 1142 / 0 AT1G31480 1115 / 0.0 shoot gravitropism 2 (SGR2) (.1) Lus10003520 [exp] 1063 / 0 AT1G31480 1035 / 0.0 shoot gravitropism 2 (SGR2) (.1) Lus10002946 [exp] 178 / 2e-49 AT1G31480 200 / 7e-58 shoot gravitropism 2 (SGR2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02862 [poplar] [flax] DDHD DDHD domain
Representative CDS sequence Show only first row Show all	>Potri.013G099700.1 pacid=42811582 polypeptide=Potri.013G099700.1.p locus=Potri.013G099700 ID=Potri.013G099700.1.v4.1 annot-version=v4.1 ATGGCGGGTGCCAAGGCAAATCCGGCGGTTTCAGAGGAAATACTGCCTGATTTGCTAAAGAATACGCCGTCAAATATTGCAAGATTGGAGGATGTGATTG AGAATTGTAAAGGTCGTCAAAAGTATCTTGCACAGACTAGAAGTCTATCTGATGGTGGTGATGTTAGGTGGTATTTCTGTAAGGTGCCTTTGGCAGAGAA TGAGTTAGCTGCCTCAGTCCCGCTCACTGAGATAGTGGGAAAGAGCGACTATTTTCGTTTTGGTATGAGGGATTCTCTTGCAATAGAAGCATCTTTCTTG CAGAGAGAAGAAGAGTTGCTCACTAGTTGGTGGAAAGAGTATGCAGAATGTAGTGAAGGCCCAGTGGGTTGGCCTACCACCAGTAAGAAGTTCAATACAC TAGAAAATGCTGATTCTCCAGAGGGTGGACGAGCAGCTCAACTACGTGAAGTTGAAGAGGAGAGAGTGGGTGTGCCTGTCAAGGGAGGACTCTATGAGGT AGATCTGGTGAAGAGACATTGTTTTCCTGTTTATTGGAATGGAGAAAATCGGCGTGTTTTGAGAGGTCATTGGTTTGCTCGTAAAGGAGGCTTGGATTGG CTCCCTCTTCGAGAGGACGTAGCTGAACAGTTAGAGATTGCATACCGGAGCCAGGTTTGGCACCGAAGGATGTTTCAACCATCAGGCCTTTTTGCAGCCC GTGTTGATCTGCAAGGCTCTACACTGGGACTTCATGCCCTTTTTACGGGAGAAGATGATACTTGGGAGGCTTGGCTCAACATTGATGCTTCTGGTTTTTC TAATATTGTTAGCTTGAGTGGGAATGAAATCAAGTTAAGGCGTGGTTACTCTGCATCTCACTCAGCAAAACCAACCCAGGATGAACTACGACAGCGGAAG GAGGAGGAAATGGATGATTACTGCTCACAGGTCCCTGTTCAGCATGTGGTTTTTATGGTTCATGGTATTGGCCAAAGATTAGAGAAGTCCAATCTTGTTG ATGATGTTGGAAACTTCTGCCATATCACCGCGAGTCTTGCTGAACAACATCTTACTTCACACCAACGAGGTGCTCAACGAGTTCTTTTCATTCCATGCCA GTGGAGAAAGGGCTTGAAGCTTAGTGGTGAAGCTGCAGTTGAAAAGATTACTTTAGATGGTGTACGTGGTTTGCGTGTAATGCTGGGTGCAACAGTTCAT GATGTATTGTACTACATGAGCCCCGTCTATTGTCAAGACATTATTAATTCGGTATCAAACCAATTAAACCGCCTGTACTTGAAGTTTCTTAAGCGGAATC CTGGTTATGATGGAAAGGTTTCGATATATGGTCATTCATTGGGAAGTGTCCTCTCATATGACATCCTGTGCCATCAAGAGAATCTGTCTTCTCCATTCCC AATGGATTGGATGTATAACGAACATCCTAGGAGTGAAGAATCTTCCCTTGATACGAAGCATGACTTGTCAATCAATCTGGAGGGTAACAATTCCAACGTA GTCAGTGAAGCCAAGGACACAGTGGATCCTGTTGATGAAGAAATGATGACTGTACGATCAACTTTATTACAAGAGGATGGGCTTGCTCGTGATTTTTCCA CAATCTTGAGTCCTCATGTGTCAGATTTGGATGAAACTGCATCAGATTCAAATTTTAAGCAAATGGGTGGAAAAGAAAGTCTCCATGAATTTGTTCATGA CTCCAGTAATGTGTTTTCTCAGGAAAGAGATCACATATGTGAAGGTACAGAAATGAAGTTAGATGACCCAATGAGTGGTGTGGAAGCCAGTGAAGACACC AGCAATAAGGAAAAAGAAATTAATATGCTGATGGAAGAGATTGATTCCTTAAAAGCTAAAATAGCAGAATTGGAATCCAAGTGTGGTGGTGAAAATGCAA ATGAAAAGGGAAAGGCTACTGAAAACATGCCAAAGCAACCCATATCTGAGACGTTGGCACTCGGACAAGATGAAGCAGCAAAGAGTTATACCCCTTATAT AAAGTACACAAAACTTGAATTCAAGGTTGACACATTCTTTGCTGTTGGATCTCCTCTTGGAGTCTTTCTTTCTCTTCGCAACATTCGGATTGGAATCGGT AAAGGGCAAAAATATTGGGCAGAGGAAAATATCAGTGAAGAGATGCCAGCATGTAGTCAAATGTTCAATATTTTTCACCCATTTGATCCTGTAGCATATA GAATAGAACCTCTAGTCTGTAAAGAACTTATCAGCAAGCGCCCAGTTATTATTCCTTACCACAAAGGTGGAAGAAGGTTGCACATTGGGTTTCAGGAGCT TACTGAAGATTTAGCTGGTCGTTCTCAAGCAATAATGAATCATCTAAACTTTGTAAAGGGTAAGGTGCTTACAGTTTGCCAATCAAGGATTGCATATAGT GAAGAAGAAGAAAATTCCCTTGAAAAAGAAGAGAGAACATATGGCTCAATAATGATGGAGAGGTTAGCTGGAAGTGAAGGACGAATAGACCACATACTTC AAGATAAAACATTTAAGCATCCATATCTGCAAGCCATTGGAGCACACACGAACTACTGGAGGGATCATGACACTGCACTCTTCATTTTAAAACACTTGTA TAGGGAGATACCTGAAGACCCCATCTTACATACAGAATCTAGTGGAGGCACCTCAAAAGATAAGATTGGTTCCACAGGCTGGTATGATAACAGTGAGGCT GCTGAGGAGGAACTTCCTTTGACATTCTCTGACAGAATGATGGCTAGAAACTTCTCGAGGAAAGCAAAGAAATATATGAAAAGCCCTTGA
AA sequence Show only first row Show all	>Potri.013G099700.1 pacid=42811582 polypeptide=Potri.013G099700.1.p locus=Potri.013G099700 ID=Potri.013G099700.1.v4.1 annot-version=v4.1 MAGAKANPAVSEEILPDLLKNTPSNIARLEDVIENCKGRQKYLAQTRSLSDGGDVRWYFCKVPLAENELAASVPLTEIVGKSDYFRFGMRDSLAIEASFL QREEELLTSWWKEYAECSEGPVGWPTTSKKFNTLENADSPEGGRAAQLREVEEERVGVPVKGGLYEVDLVKRHCFPVYWNGENRRVLRGHWFARKGGLDW LPLREDVAEQLEIAYRSQVWHRRMFQPSGLFAARVDLQGSTLGLHALFTGEDDTWEAWLNIDASGFSNIVSLSGNEIKLRRGYSASHSAKPTQDELRQRK EEEMDDYCSQVPVQHVVFMVHGIGQRLEKSNLVDDVGNFCHITASLAEQHLTSHQRGAQRVLFIPCQWRKGLKLSGEAAVEKITLDGVRGLRVMLGATVH DVLYYMSPVYCQDIINSVSNQLNRLYLKFLKRNPGYDGKVSIYGHSLGSVLSYDILCHQENLSSPFPMDWMYNEHPRSEESSLDTKHDLSINLEGNNSNV VSEAKDTVDPVDEEMMTVRSTLLQEDGLARDFSTILSPHVSDLDETASDSNFKQMGGKESLHEFVHDSSNVFSQERDHICEGTEMKLDDPMSGVEASEDT SNKEKEINMLMEEIDSLKAKIAELESKCGGENANEKGKATENMPKQPISETLALGQDEAAKSYTPYIKYTKLEFKVDTFFAVGSPLGVFLSLRNIRIGIG KGQKYWAEENISEEMPACSQMFNIFHPFDPVAYRIEPLVCKELISKRPVIIPYHKGGRRLHIGFQELTEDLAGRSQAIMNHLNFVKGKVLTVCQSRIAYS EEEENSLEKEERTYGSIMMERLAGSEGRIDHILQDKTFKHPYLQAIGAHTNYWRDHDTALFILKHLYREIPEDPILHTESSGGTSKDKIGSTGWYDNSEA AEEELPLTFSDRMMARNFSRKAKKYMKSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	0	1	SGR2.1
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	1.00	0.9027
AT4G11970			YTH family protein (.1.2.3)		Potri.001G113500 [exp]	2.23	0.8397
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	2.44	0.8519
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.017G111800 [exp]	4.89	0.8097
AT1G49180			protein kinase family protein ...		Potri.019G011600 [exp]	8.71	0.8658
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	14.14	0.8179
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	16.43	0.7718
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	17.29	0.8067
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	17.83	0.8350
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Potri.004G094200 [exp]	18.97	0.7984

Compare expression of checked genes

Potri.013G099700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.