Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10070 303 / 7e-92 KH domain-containing protein (.1) AT1G33680 283 / 3e-84 KH domain-containing protein (.1) AT2G25970 177 / 5e-47 KH domain-containing protein (.1) AT5G50940 67 / 4e-12 RNA-binding KH domain-containing protein (.1) AT5G04430 61 / 8e-10 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT1G51580 59 / 8e-09 RNA-binding KH domain-containing protein (.1) AT5G15270 49 / 1e-05 RNA-binding KH domain-containing protein (.1.2) AT5G64390 47 / 4e-05 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G14170 47 / 4e-05 RNA-binding KH domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072500 [exp] 729 / 0 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.018G055300 [exp] 199 / 2e-54 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 193 / 3e-52 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.005G240601 [exp] 65 / 2e-12 ND / Potri.010G230500 [exp] 62 / 5e-10 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G042500 [exp] 59 / 1e-08 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.008G030700 [exp] 55 / 9e-08 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G085500 [exp] 54 / 2e-07 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 53 / 6e-07 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002947 [exp] 412 / 4e-133 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10003519 [exp] 399 / 2e-127 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10004445 [exp] 182 / 3e-51 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10020998 [exp] 182 / 3e-49 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 181 / 6e-49 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10013531 [exp] 139 / 3e-34 AT2G25970 325 / 4e-103 KH domain-containing protein (.1) Lus10037932 [exp] 61 / 1e-09 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10038665 [exp] 61 / 1e-09 AT5G04430 447 / 2e-159 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10033557 [exp] 57 / 2e-08 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10017596 [exp] 57 / 4e-08 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.013G099800.1 pacid=42810814 polypeptide=Potri.013G099800.1.p locus=Potri.013G099800 ID=Potri.013G099800.1.v4.1 annot-version=v4.1 ATGGCGGAGGAGGAGGTTGTGGCGCCGGCAGTGGTTCCTGTGGGGTCGGATCACAAGAGAAAGCTGGAAGATTTAGAGCCTGAAACTCTAGAAGAAGCTG AGCCGAGTCCAGCCGACGAACAGGAGCCTGAAGAGGATGGGAAAGCAGATGACGTGGAGGATGGTGGTTCGCCTGATTCTAAACGGCTAAGGATCGATGA AAGCAAAACCGATGGGTTAGCCAGCGAAAATGGTTTCAAAGGAGATGAGTCAGATGAACATGCAAGGGAAGAAGCTGAAGAGCCGTGTGTTGAGAATGAG CATGGAAAAGATGATAATGCTGAGCCTCTGTCCGAGGAGGTGCCGGAAACAAATGATAAAGAAGACCCAAATGCAGATAATCAGGAGACTAATACTACTG ACCAAGCTACTGTTGATGATTCCAAGACGGAGGATGCTGAGAAACCATCTTTAGAGGATGCTGGGAAACCTTGTGCTGAAAAGCTGTCTGAGGAGGCTGA GGAACATCTATCTGAGGATCAAACAACATCGCGTAAAATGGAGGTTCCAAATGACAAGGTTGGAGTACTTATTGGCAAGGGTGGAGATACTATACGTTAC CTGCAGTATAATTCTGGAGCTAAAATTCAAATCACAAGGGATGCTGAAGCTGATCTACAATCCACAACAAGGCCAGTGGAATTAATAGGGAGTTTAAGTA GTATAAGCAAGGCTGAGAAGCTCATCAATGCAGTCATAGCAGAGGCTGATGCTGGGGGTTCCCCCTCTCTGATAGCTATGGGCCTTGCTACTAGTGCACA AGCTGCTGAAGTGGGAGATCAGCTGGAGATTCCAATTCCCAATGAGAAGGTTGGTCTAATCATAGGACGGGGTGGGGAAACCATCAAAGGTCTTCAAGCC AAATCAGGGGCTCGCATTCAGCTGATACCTCAACATCTTCCAGAAGGGGATGAATCAAAAGAAAGAACAGTGCGTGTAACTGGAGATACGAGACAAATTG AGACGGCCAGAGAAATGATAATGGATGTCATGAATCAGACTATGAGGCCGGCAACTCTCTCTAGCAGCTTTAACCAGCAGCAGTCCTATCGACCCCGAGT ACCCACTGGCCCAGCTCATTGGGGTCCACGTGGTCATCATTCAAACCAGCAAATGCCGTATGATTATCATCGGGGTCCATATCCAACTTATGGTGGTTAT CCTCCACAACAGATGGCTCCTAGAAGTAACTACAGTTCTGGCTGGGAGCAAAGACCTCCTCCTAACATGCAAGGCTTTCATCCGCATAGTGGTGGCTATG ATTACTATAGTGGCCAAGGAGGTCATGTATCTGATCATCCGGTATCTGCCCCAATGTCTACTCCCCTTCCTGGGCATGTTTCTCGTCATTCCCCTGCCCC TGTTATGGGTGGACCTCCATCCCAGGTGAATTACAATTATGGACAGTCCCATGGTCCAGATTATGGGCATCAAGCTCCCTATTCCCAGGCAGCTCCTTCT CAGCAGAGCTATGGGTATGGATATGATGAACCGAAGTATCCTTATGGGCATGGAAGTTCTCAGCCAGCTTATCCGCAGGCCAGCAATCAACCAGGCTATG GGGCACAGCAGCAATATGGCAAGCAGCCATCGTATGGCATGCCATCACAGGGTCCACCTCCTCAATCATATGGCCCTCCTAGGCCTGGTCAGCCAGGAGA TGCATCTTATCAAGGTCCCATTCAATCAAGTCAATTGTATGGTCAACCACCACAACAGCAGTATCCATATGCATCAAGTGGGCCCATGCAGCAAGCATAT CCTCCTTATGGGTCTGGATCAGCTTCCGATGGGTATAATCAGGCACCACCTGCATCTGGCCCAGGCTATCCTCAGCAAGGTGGCCAGCCTGTTCCAACAT ATGGACAGCCAGCTGGACAAGCAGCAGCAGCTGGCTATGGTCAAGTCCCTGCTGGGGGCTATGGAGGGTATCCATCTTCACAAGGTTTTCCTGAGCAGCA AGCTGCGAACACTGCAGGTTATGGCTATCAAGTGTCCCAAGATCCTGCTTATGGTAGTGGCCCTGCATTCAGTGCACCAACCAGCCAGCAGGCTTATGCT CAACCAACAGCAGCTCAACCAAGTTATGATCAATCAGTCCCACAATCGGCTGGTTATGTCGCTGCTCCAGCAACAGCACCGGTTGGTTATGGGAAAACGG TGTCTCCACAGCCTGGTTTTCCACAATATGACTCAACCCAGATGTATGCTGCTCCACGCTGA
AA sequence Show only first row Show all	>Potri.013G099800.1 pacid=42810814 polypeptide=Potri.013G099800.1.p locus=Potri.013G099800 ID=Potri.013G099800.1.v4.1 annot-version=v4.1 MAEEEVVAPAVVPVGSDHKRKLEDLEPETLEEAEPSPADEQEPEEDGKADDVEDGGSPDSKRLRIDESKTDGLASENGFKGDESDEHAREEAEEPCVENE HGKDDNAEPLSEEVPETNDKEDPNADNQETNTTDQATVDDSKTEDAEKPSLEDAGKPCAEKLSEEAEEHLSEDQTTSRKMEVPNDKVGVLIGKGGDTIRY LQYNSGAKIQITRDAEADLQSTTRPVELIGSLSSISKAEKLINAVIAEADAGGSPSLIAMGLATSAQAAEVGDQLEIPIPNEKVGLIIGRGGETIKGLQA KSGARIQLIPQHLPEGDESKERTVRVTGDTRQIETAREMIMDVMNQTMRPATLSSSFNQQQSYRPRVPTGPAHWGPRGHHSNQQMPYDYHRGPYPTYGGY PPQQMAPRSNYSSGWEQRPPPNMQGFHPHSGGYDYYSGQGGHVSDHPVSAPMSTPLPGHVSRHSPAPVMGGPPSQVNYNYGQSHGPDYGHQAPYSQAAPS QQSYGYGYDEPKYPYGHGSSQPAYPQASNQPGYGAQQQYGKQPSYGMPSQGPPPQSYGPPRPGQPGDASYQGPIQSSQLYGQPPQQQYPYASSGPMQQAY PPYGSGSASDGYNQAPPASGPGYPQQGGQPVPTYGQPAGQAAAAGYGQVPAGGYGGYPSSQGFPEQQAANTAGYGYQVSQDPAYGSGPAFSAPTSQQAYA QPTAAQPSYDQSVPQSAGYVAAPATAPVGYGKTVSPQPGFPQYDSTQMYAAPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10070			KH domain-containing protein (...		Potri.013G099800 [exp]	0	1
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Potri.004G113700 [exp]	4.89	0.8376
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.014G147900 [exp]	6.00	0.8566
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	6.00	0.8747
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G186900 [exp]	7.54	0.8754
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	8.12	0.8794
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.015G002300 [exp]	8.48	0.8635	APRR5.3,PtpRR3
AT1G23230			unknown protein		Potri.008G133300 [exp]	9.74	0.8424
AT3G52060			Core-2/I-branching beta-1,6-N-...		Potri.010G242900 [exp]	11.31	0.8313
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	14.49	0.8628
AT1G72390			unknown protein		Potri.001G165800 [exp]	15.16	0.8640

Compare expression of checked genes

Potri.013G099800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.