Plant FIBer expression Database

Potri.013G099900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10050 548 / 0 esterase/lipase/thioesterase family protein (.1)
AT2G26740 43 / 0.0002 ATSEH soluble epoxide hydrolase (.1)
AT1G68890 43 / 0.0003 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G072900
[exp]
636 / 0 AT4G10050 555 / 0.0 esterase/lipase/thioesterase family protein (.1)
Potri.010G135500
[exp]
48 / 8e-06 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Potri.016G077066
[exp]
44 / 5e-05 AT3G52570 173 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1)
Potri.002G202700
[exp]
43 / 0.0002 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006170
[exp]
544 / 0 AT4G10050 530 / 0.0 esterase/lipase/thioesterase family protein (.1)
Lus10041054
[exp]
441 / 6e-155 AT4G10050 429 / 3e-150 esterase/lipase/thioesterase family protein (.1)
Lus10021315
[exp]
52 / 4e-07 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1)
Lus10030915
[exp]
52 / 8e-07 AT1G68890 1693 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Lus10022689
[exp]
43 / 0.0001 AT3G52570 182 / 5e-57 alpha/beta-Hydrolases superfamily protein (.1)
Lus10016992
[exp]
42 / 0.0005 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF12697 Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence
>Potri.013G099900.4 pacid=42811067 polypeptide=Potri.013G099900.4.p locus=Potri.013G099900 ID=Potri.013G099900.4.v4.1 annot-version=v4.1
ATGCAATCGTCAAATCTCACTTCACTACCTGAAGATGATGAACAACAACAACATCAACAAAATCAAAAGCCACCATCATTCTCTGCTTTTGCTTCCCTTC
CAACTCGCCCTGCTACTCAGAGTTGTTTACAAAAGTACGCTCCATTGGAGTGGACAGGATTGTTTGACAAGGAGGAAGATGTCTGCATTCCTGACTCCAA
TGATGTATTTCATGTATACATGGCAGGGACAGAGGGACCTGTTGTTTTTTGTTTACATGGAGGTGGTTATTCTGGGCTTTCATTTGCGCTCTCAGCGAGT
AAAATTAAGGAGAAAGCTCGGGTAGTTGCTATGGACTTGAGAGGACATGGAAAGACTTCGACTGAAAATGAGCTCGACCTTTCTGTTGAGGCTATGTGTA
ATGATTTTTTCGCTGTAGTGAAGGCAATGTATGGAGATTCTCCTCCAGCAATTGTGCTTGTTGGCCACAGCATGGGGGGATCAGTTGCTGTGCATGTTGC
TGCTAAAAGAGCGTTACCAAGCTTGGCTGGGCTGGTTGTTGTGGATGTCGTGGAGGGAACAGCTATGGCTTCATTGATTCACATGCAGAAACTCTTATCA
AGTAGAATGCAGCATTTTTCTAGTTTGGAAAAAGCGATAGAATGGAGTGTCAAGGGAGGTTCATTAAGAAACATCGATTCTGCTCGGGTATCTGTGCCTA
CCACATTAAAATACAACGATGCAAAGAACTGTTATGTTTATAGAACCTGCTTGGAGGAAACAGAACAATATTGGAGAGGCTGGTATGAAGGCCTTTCAGA
TAAATTTCTATCATGTCCCGTTCCCAAGCTCTTGCTTTTAGCAGGAACAGACAGACTGGACAGATCTCTTACAATTGGGCAAATGCAAGGCAAGTTCCAA
ATGGTAGTTGTCAGACACACTGGACATGCTATACAGGAAGACACACCCGATGAATTTGCGACACTGGTAGTTAATTTTATATCCCGTAACCGGATAGGTC
CTCATGGGGTCGAGATACCTGGTCTCCACCGACCATCACAACCACAACAATGA
AA sequence
>Potri.013G099900.4 pacid=42811067 polypeptide=Potri.013G099900.4.p locus=Potri.013G099900 ID=Potri.013G099900.4.v4.1 annot-version=v4.1
MQSSNLTSLPEDDEQQQHQQNQKPPSFSAFASLPTRPATQSCLQKYAPLEWTGLFDKEEDVCIPDSNDVFHVYMAGTEGPVVFCLHGGGYSGLSFALSAS
KIKEKARVVAMDLRGHGKTSTENELDLSVEAMCNDFFAVVKAMYGDSPPAIVLVGHSMGGSVAVHVAAKRALPSLAGLVVVDVVEGTAMASLIHMQKLLS
SRMQHFSSLEKAIEWSVKGGSLRNIDSARVSVPTTLKYNDAKNCYVYRTCLEETEQYWRGWYEGLSDKFLSCPVPKLLLLAGTDRLDRSLTIGQMQGKFQ
MVVVRHTGHAIQEDTPDEFATLVVNFISRNRIGPHGVEIPGLHRPSQPQQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G10050 esterase/lipase/thioesterase f... Potri.013G099900
[exp]
0 1
AT4G28088 Low temperature and salt respo... Potri.006G182500
[exp]
3.16 0.9312
AT3G23610 DSPTP1 dual specificity protein phosp... Potri.010G033000
[exp]
3.16 0.9336
AT5G50840 unknown protein Potri.010G219700
[exp]
7.87 0.8812
AT1G16170 unknown protein Potri.001G038200
[exp]
10.24 0.9174
AT5G02030 HD PNY, BLR, BLH9,... VAAMANA, REPLUMLESS, PENNYWISE... Potri.008G061000
[exp]
11.31 0.8941
AT5G05800 unknown protein Potri.008G196901
[exp]
13.11 0.9144
AT3G18670 Ankyrin repeat family protein ... Potri.008G022900
[exp]
14.14 0.9076
AT5G04700 Ankyrin repeat family protein ... Potri.008G023500
[exp]
18.00 0.8755
AT1G69230 SP1L2 SPIRAL1-like2 (.1.2) Potri.017G095200
[exp]
18.46 0.9064
AT2G40620 bZIP AtbZIP18 Basic-leucine zipper (bZIP) tr... Potri.019G130000
[exp]
21.07 0.9100

Potri.013G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.