Plant FIBer expression Database

Potri.013G100000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33780 385 / 3e-134 Protein of unknown function (DUF179) (.1)
AT3G29240 182 / 7e-55 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
AT3G19780 69 / 1e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G073000
[exp]
531 / 0 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1)
Potri.004G125800
[exp]
169 / 3e-50 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009463
[exp]
387 / 1e-134 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1)
Lus10001286
[exp]
377 / 8e-131 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1)
Lus10005224
[exp]
169 / 4e-50 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
Lus10030696
[exp]
72 / 1e-15 AT3G29240 139 / 8e-42 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
Lus10030695
[exp]
61 / 5e-11 AT3G29240 89 / 8e-22 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02622 DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence
>Potri.013G100000.1 pacid=42812736 polypeptide=Potri.013G100000.1.p locus=Potri.013G100000 ID=Potri.013G100000.1.v4.1 annot-version=v4.1
ATGATGGATCTGTGGGCAGTCCATGTAAAGAATACAACTGGAAGCCCTTTTTGTTTGAGAAATCATTCAATTCCAGAGAAATCATTTGTTTCCTCCAATT
TTGGGAAATTTAGGGTTTTGAAGCATAAAATTTCTTCTTCCGGGTATCATTCTTTGGGAGTTAAAGCTATGGCTAAGAAGAATAGTAATGATAACTCCAA
TTCCTCTTCTCCTTCTGGAAATGGAGATGGCTCAAAAGGAAGTAACCCTCCTGATGGGAACAAATCCAACGACTATGCTTCCCAAAAGTCTCACAGGGTA
AACTTGGACTGGAGAGAGTTTAGAGCAAATTTATTTGCTCAGGAGCAGGCAGAGAAGGCAGAATCTGATGCTCACAGCCAAACTGGGACACCCCAAGAGT
CGAAACCCCTTAGCCTGAAATGGGCCCACCCTATTCCTGTACCTGAGACTGGTTGTGTCCTTGTTGCTACAGAAAAACTTGATGGAGTTCGCACTTTTGA
AAGAACCGTTGTTCTCCTCCTCAGATCTGGAACCAGACATCCACAAGAGGGACCATTTGGAGTTGTCGTTAACCGTCCACTGAACAAAAAGATTAGGCAC
ATGAAGCCCACAAATATGGAATTAGAAACCACTTTTGCTGATTGTTCTCTTAATTTTGGTGGACCTCTTGATGCAAGCATGTTTTTATTAAAAAGTCGGG
AGAAGAAGATTAAAGAGTTCGAAGAGGTGATCCCTGGCCTGTGTTTTGGTGCTGGAAATAGTTTGGATGAAGCTGGAGCACTTGTGAGAGAAGGGGTGCT
GAAGCCTCAGGATTTCAGATTCTTTGTCGGTTATGCTGGGTGGCAGCTAGATCAGTTGAGGGAGGAGATTGAATCAGATTATTGGTATGTGGCTGCATGT
AGCTCAAATCTGATTTGTGGGGGTTCATCAGAAAGTTTATGGGAGGAGATTTTGCAGCTAATGGGTGGTCATTACTCGGAACTAAGCCGAAAGCCCAAGC
AGGATATGTAG
AA sequence
>Potri.013G100000.1 pacid=42812736 polypeptide=Potri.013G100000.1.p locus=Potri.013G100000 ID=Potri.013G100000.1.v4.1 annot-version=v4.1
MMDLWAVHVKNTTGSPFCLRNHSIPEKSFVSSNFGKFRVLKHKISSSGYHSLGVKAMAKKNSNDNSNSSSPSGNGDGSKGSNPPDGNKSNDYASQKSHRV
NLDWREFRANLFAQEQAEKAESDAHSQTGTPQESKPLSLKWAHPIPVPETGCVLVATEKLDGVRTFERTVVLLLRSGTRHPQEGPFGVVVNRPLNKKIRH
MKPTNMELETTFADCSLNFGGPLDASMFLLKSREKKIKEFEEVIPGLCFGAGNSLDEAGALVREGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAAC
SSNLICGGSSESLWEEILQLMGGHYSELSRKPKQDM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33780 Protein of unknown function (D... Potri.013G100000
[exp]
0 1
AT1G27385 unknown protein Potri.001G056500
[exp]
5.09 0.9598
AT2G20920 Protein of unknown function (D... Potri.009G137600
[exp]
7.74 0.9594
AT4G18740 Rho termination factor (.1.2.3... Potri.011G069300
[exp]
9.00 0.9479
AT5G01590 unknown protein Potri.016G123900
[exp]
16.00 0.9486
AT4G09650 PDE332, ATPD PIGMENT DEFECTIVE 332, ATP syn... Potri.014G102100
[exp]
16.61 0.9535
AT2G01110 TATC, PGA2, APG... unfertilized embryo sac 3, TWI... Potri.010G117200
[exp]
17.20 0.9526 APG2.1
AT3G56330 N2,N2-dimethylguanosine tRNA m... Potri.013G093500
[exp]
19.89 0.9406
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G098800
[exp]
23.06 0.9426
AT2G43950 OEP37, ATOEP37 ARABIDOPSIS CHLOROPLAST OUTER ... Potri.017G007300
[exp]
25.49 0.9501
AT1G59840 CCB4 cofactor assembly of complex C... Potri.008G191900
[exp]
25.49 0.9429

Potri.013G100000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.