Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71530 722 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 659 / 0 Protein kinase superfamily protein (.1) AT1G53050 637 / 0 Protein kinase superfamily protein (.1) AT4G10010 629 / 0 Protein kinase superfamily protein (.1) AT1G09600 583 / 0 Protein kinase superfamily protein (.1) AT1G57700 557 / 0 Protein kinase superfamily protein (.1) AT1G54610 537 / 0 Protein kinase superfamily protein (.1.2.3) AT5G50860 531 / 0 Protein kinase superfamily protein (.1) AT1G03740 501 / 6e-169 Protein kinase superfamily protein (.1.2) AT5G44290 494 / 8e-168 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073100 [exp] 1041 / 0 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G226900 [exp] 655 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 606 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 606 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 605 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 568 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 558 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 554 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 552 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001285 [exp] 707 / 0 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009464 [exp] 682 / 0 AT1G71530 652 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025773 [exp] 593 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 591 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 588 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 566 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 555 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 554 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 551 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10008925 [exp] 539 / 0 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G100100.2 pacid=42812267 polypeptide=Potri.013G100100.2.p locus=Potri.013G100100 ID=Potri.013G100100.2.v4.1 annot-version=v4.1 ATGGGCTGCATTTGCTCAAAAGGAGCTGCAGAAGAAGATGTAAATAGCAATACGAATGATCAGAAGCAGACAGAGGTGGATAAGTCTTCTGTGCAAATGG TTGCTCCTGCAATATCCAAGAAAGAAGAGATGTTGGTAGATTTTCTTGGCCAAAAAGATGGATCGGTGCGTCTTGTGTCGAAGGCAAATGTTGGGAATGT TCCTGTTTCATTGGAAGAAGGAGAAAAGGAAAGGAAACTTGTTGATGTGAAGAGTAAAGGACATAATAGATCGATAACAATGGATTCAGAGCCCAATGAC GACCAACCACGTGTGAGTATGATGATTAGCATACGTCATGGATCTGAAAGGGAAGCATGGCCAGAATGGTTAACAGCAGTTGCTGGAGAAGCCGTCAAAG GGTGGCTGCCTCGACGAGCAGACTCATTTGAGAAGCTAGACAAGATTGGACAAGGAACTTACAGTACTGTATACAAGGCTCGTGACCTTGAAACTGGAAA AATTGTTGCAATGAAGAAGGTGCGGTTTGTCAACATGGATCCGGAAAGTGTCCGCTTCATGGCTAGGGAAATTGTTAATTTGCGTAAACTTGACCATCCA AATGTTATGAAACTTGAAGGAATAGTCACTTCGAGGATGTCAGGGAGCTTGTACCTTGTGTTTGAGTACATGGAGCATGACCTTGCTGGGCTTGCAGCAA ATCCTAGCATCAAGTTTACGGAATCTCAGATCAAATGCTACGTGCAACAACTTCTACATGGACTTGAGCACTGCCATAAACAAGGTGTCTTGCATCGAGA CATCAAGGGCTCAAATCTTCTGATAAACAATGATGGAGTTCTCAAGATTGCAGACTTTGGTCTGGCAACTTTTTATCATCCTGATCAGAGTCAGCCTTTA ACAAGTCGCGTAGTAACTCTCTGGTATAGGGCACCGGAGCTTTTGCTAGGTGCTACAGAGTATGGACCTGCTATAGATATGTGGAGTGCTGGCTGCATTC TTGCTGAATTATTCGCTGGCAAGCCTATCATGCCTGGAAGAACAGAGGTAGAGCAAATGCATAAGATTTTTAAGCTTTGTGGTTCACCCTCTGAGATCTA CTGGCAGAAGACAAAGTTTCCACATGCAACTAGTTTCAAACCTCAGCAATCTTACATACGATGTATTACTGAGACATTCAAACATTTCCCTCCGTCAGCT TTGACTCTTGTTGATAAGCTCCTGTCAATGGAACCACAAGATCGAGGTTCAGCCACTTCAGCTCTTCGAAGTGAGTTCTTCAGAATAGAGCCCCTCCCTG CTGATCCATCAAGTCTACCAAAATATTCTCCATGCAAGGAACTGGATGCCAAGTTGCGAGATGAGGAAGCCAGAAGGCAAAGAGCAGAGGCTGTAAAAGG ACGAGGACCTGAATCTGTCAGAAGGGGTTCAATAGATACTAAGAAAGCTCCCACTCCGGAATTCACTGCTCAGGCACAGCCAAAAACTGCAAGTTCCAGC TATAAATATTATATCCAGGAGGATGCGGGGACTGGCTTCCGAATTGAGCCTCCTAGAGTATCCAAGCAGAATGGTTTCGAGCACTCTACTTCAATGATTC ACCCTTCCGCAGTAGCAGGATTGTCGTTAAATAAAAGTGCAGGTTCTTCAAGAAATAATCCAGAATTGAGGGCACAGAAATCTCACGAGTCTCAATCAGG GGAGATGTCTAGCTCCTCTCTTAAGAAGAATGAAAAGGCTCCTCCGAGCAGAGATTCTTCAATGGGGGGGTATGTTCCCAGGAAAACCAGAATCCATTAT TCTGGACCGTTGATGCCTCCTGGGGGGAACATGGAAGAAATACTCAAAGAGCACGATAGACAAATCCAGCAGGCCGTTCGTAAAGCACGTCTTGAAAAGT CGGGGACCAGAGATAACCTTGATGGTTATGGGCAACTACACAACAACAGACGATACAAAGGGTAA
AA sequence Show only first row Show all	>Potri.013G100100.2 pacid=42812267 polypeptide=Potri.013G100100.2.p locus=Potri.013G100100 ID=Potri.013G100100.2.v4.1 annot-version=v4.1 MGCICSKGAAEEDVNSNTNDQKQTEVDKSSVQMVAPAISKKEEMLVDFLGQKDGSVRLVSKANVGNVPVSLEEGEKERKLVDVKSKGHNRSITMDSEPND DQPRVSMMISIRHGSEREAWPEWLTAVAGEAVKGWLPRRADSFEKLDKIGQGTYSTVYKARDLETGKIVAMKKVRFVNMDPESVRFMAREIVNLRKLDHP NVMKLEGIVTSRMSGSLYLVFEYMEHDLAGLAANPSIKFTESQIKCYVQQLLHGLEHCHKQGVLHRDIKGSNLLINNDGVLKIADFGLATFYHPDQSQPL TSRVVTLWYRAPELLLGATEYGPAIDMWSAGCILAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEIYWQKTKFPHATSFKPQQSYIRCITETFKHFPPSA LTLVDKLLSMEPQDRGSATSALRSEFFRIEPLPADPSSLPKYSPCKELDAKLRDEEARRQRAEAVKGRGPESVRRGSIDTKKAPTPEFTAQAQPKTASSS YKYYIQEDAGTGFRIEPPRVSKQNGFEHSTSMIHPSAVAGLSLNKSAGSSRNNPELRAQKSHESQSGEMSSSSLKKNEKAPPSRDSSMGGYVPRKTRIHY SGPLMPPGGNMEEILKEHDRQIQQAVRKARLEKSGTRDNLDGYGQLHNNRRYKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71530			Protein kinase superfamily pro...		Potri.013G100100 [exp]	0	1
AT5G28040	GeBP		DNA-binding storekeeper protei...		Potri.004G090900 [exp]	2.00	0.8196
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	4.58	0.8347
AT1G30690			Sec14p-like phosphatidylinosit...		Potri.001G461400 [exp]	8.71	0.8337
AT1G15670			Galactose oxidase/kelch repeat...		Potri.001G178500 [exp]	12.24	0.8154
AT1G64385			unknown protein		Potri.003G139400 [exp]	12.72	0.7796
AT1G18010			Major facilitator superfamily ...		Potri.012G011000 [exp]	14.69	0.8087
AT2G35910			RING/U-box superfamily protein...		Potri.006G201500 [exp]	15.55	0.7928
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.006G039200 [exp]	23.10	0.8246
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.010G190400 [exp]	42.41	0.8088
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	43.81	0.7742	ACO4

Compare expression of checked genes

Potri.013G100100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.