Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10020 505 / 0 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G50700 276 / 2e-91 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 276 / 2e-91 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50770 242 / 5e-78 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47350 231 / 3e-74 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50590 220 / 4e-70 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT5G50690 220 / 4e-70 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT3G47360 220 / 6e-70 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G03330 78 / 5e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 73 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073200 [exp] 597 / 0 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.012G102000 [exp] 253 / 1e-82 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.015G100000 [exp] 252 / 2e-82 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 251 / 7e-82 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 242 / 2e-78 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 241 / 6e-78 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 216 / 6e-68 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.007G086600 [exp] 78 / 4e-16 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 72 / 4e-14 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041045 [exp] 538 / 0 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10006178 [exp] 519 / 0 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 508 / 0 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 503 / 1e-179 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1) Lus10016748 [exp] 283 / 4e-92 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10022441 [exp] 273 / 3e-90 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10043187 [exp] 265 / 9e-87 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 263 / 7e-86 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 244 / 2e-78 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 240 / 4e-77 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.013G100200.1 pacid=42811421 polypeptide=Potri.013G100200.1.p locus=Potri.013G100200 ID=Potri.013G100200.1.v4.1 annot-version=v4.1 ATGCTCTTCATTAATCTTTCTGCCATGAGTTTTATAAACTCTGTGTTGGATTGGGTGGTGCCTCCTGCTAGCTTGGTGATGCTAGCATGTTCATGGCCAG CCTTATGCTTTATCAATACATGTGAGTGGCTCTACAGATCTTTCTTTAGTGAGGATATGGAGGATAAAGTTGTTATCATCACTGGAGCTTCTTCTGGCAT AGGAGAACAAATTGCATATGAATATGCAAAGAGGAAAGCAATTCTTGTTCTGATTGCACGTAGAGAGCACCGGCTTAGAGGGGTCAGTGAGAAAGCTAGG TATATTGGTGCAAAGCGTGTCCTGATTATGGCTGCAGATGTTGTCAAGGAGGATGATTGTAGGAGATTTGTCAATGAGACCATAAATTACTTTGGTCGGG TGGATCATCTTGTCAATACAGCAAGTTTGGGGCATACATTTTACTTTGAAGAAGTAGGAGACACCTCTGTGTTTCCCCATTTCTTGGACATAAACTTTTG GGGAAATGTCTATCCAACTTATGTGGCTCTTCCATACCTACGTCAGAGCAATGGACGAGTTGTTGTTAATGCAGCAGTTGAGAGCTGGTTACCTCTGCCG AGAATGAGCTTATATGCTGCTGCAAAGGCTGCCCTGGTGAGCTTCTACGAGTCACTGAGATTTGAAGTGAATGGTGAAGTTGGAATAACAATTGCATCTC ATGGTTGGATTGGGAGCGAAATGAGTAGAGGCAAGTTCATGCTAGAGGATGGAGCAGAGATGCAATGGAAAGAAGAGAGAGAAGTAAACGGGACTGGTGG TCCAGTAGAGGACTATGCAAAGATGATTGTGTCGGGAGCTTGCCGAGGACATCAATATGTCAAGTACCCAAGCTGGTATGACATATTCCTCCTTTACAGG ATGTTTGCACCTGGAATTCTCAACTGGGCTCTTCGAATGTTGCTTGCACCGAATGGTTCAAGAAGAACGTCTATGATAGGCACCGGGAGACCTGCATTAA TTTGA
AA sequence Show only first row Show all	>Potri.013G100200.1 pacid=42811421 polypeptide=Potri.013G100200.1.p locus=Potri.013G100200 ID=Potri.013G100200.1.v4.1 annot-version=v4.1 MLFINLSAMSFINSVLDWVVPPASLVMLACSWPALCFINTCEWLYRSFFSEDMEDKVVIITGASSGIGEQIAYEYAKRKAILVLIARREHRLRGVSEKAR YIGAKRVLIMAADVVKEDDCRRFVNETINYFGRVDHLVNTASLGHTFYFEEVGDTSVFPHFLDINFWGNVYPTYVALPYLRQSNGRVVVNAAVESWLPLP RMSLYAAAKAALVSFYESLRFEVNGEVGITIASHGWIGSEMSRGKFMLEDGAEMQWKEEREVNGTGGPVEDYAKMIVSGACRGHQYVKYPSWYDIFLLYR MFAPGILNWALRMLLAPNGSRRTSMIGTGRPALI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Potri.013G100200 [exp]	0	1
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.014G055700 [exp]	14.42	0.7960
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.015G007600 [exp]	29.39	0.7778
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.015G035800 [exp]	49.38	0.7688
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.001G188500 [exp]	70.14	0.7445
					Potri.010G001200 [exp]	81.24	0.7061
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.019G093300 [exp]	81.46	0.7498	2,Pt-FLA9.2
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.006G193900 [exp]	85.32	0.7389
AT2G22490		CYCD2;1, ATCYCD...	Cyclin D2;1 (.1.2)		Potri.001G292300 [exp]	97.22	0.7314
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014100 [exp]	103.15	0.7314
AT5G40610			NAD-dependent glycerol-3-phosp...		Potri.017G070900 [exp]	116.18	0.7122

Compare expression of checked genes

Potri.013G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.