Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1) AT5G41470 95 / 1e-23 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074800 [exp] 236 / 1e-79 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.001G100500 [exp] 92 / 1e-22 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.003G131500 [exp] 92 / 2e-22 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G013200 [exp] 46 / 4e-06 AT4G22370 114 / 6e-32 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041048 [exp] 214 / 8e-71 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10006176 [exp] 100 / 7e-25 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10032294 [exp] 75 / 3e-16 AT5G41470 177 / 1e-54 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10024664 [exp] 74 / 8e-16 AT5G41470 196 / 2e-61 Nuclear transport factor 2 (NTF2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF12680 [poplar] [flax] SnoaL_2 SnoaL-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G100600.2 pacid=42812461 polypeptide=Potri.013G100600.2.p locus=Potri.013G100600 ID=Potri.013G100600.2.v4.1 annot-version=v4.1 ATGTTTTTAGGCAATAAGAAAAAGAGTTCTTCACATTTGAGTAGATGCAAGCAAAGAATGTGGAACCCACAAATGACAATCTCATCGTCAGTCAATCAGA AGGTCACAGCTGCAAAATCACCAGCAACTGCATCTAATGTTATTAGGAGATTCTATGATGGACTAAACAGCCATGATCTGGTTGCTGTTGAAGAGATCAT TGCTGAGAATTGTGTCTACGAGGACCTTATCTTTCCTCATCCCTGCGTTGGTCACAAGGAAGTAATAGAATTCTTCCAACAGTTCTTTGATTCTACTAGC TCAGACCTTCATTTTGTCATTGATGATATATCTGGTGAGGATTCCCAAGCAGTTGGAGTTATATGGCATATAGAATGGAAGGGCAAGCCTATGCCATGTA GCAAAGGATGCAGTTTTTATCGGCTAGAGACTGTGAACGGCAAGAGACAAATAATTTATGGACGAGACAGCGTTGAGTCTGCAATCAAGCCGGGGAAGGC AGCTTTGGTTTTAATCAGAAGTGTAATTTGGTTGCTGCAAAAGTTTGATCAACTAACAAACCAGCTATAA
AA sequence Show only first row Show all	>Potri.013G100600.2 pacid=42812461 polypeptide=Potri.013G100600.2.p locus=Potri.013G100600 ID=Potri.013G100600.2.v4.1 annot-version=v4.1 MFLGNKKKSSSHLSRCKQRMWNPQMTISSSVNQKVTAAKSPATASNVIRRFYDGLNSHDLVAVEEIIAENCVYEDLIFPHPCVGHKEVIEFFQQFFDSTS SDLHFVIDDISGEDSQAVGVIWHIEWKGKPMPCSKGCSFYRLETVNGKRQIIYGRDSVESAIKPGKAALVLIRSVIWLLQKFDQLTNQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71480			Nuclear transport factor 2 (NT...		Potri.013G100600 [exp]	0	1
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.005G239400 [exp]	2.82	0.9967
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	3.60	0.9929
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163300 [exp]	6.00	0.9947	GER2.30
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	6.48	0.9958
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G015800 [exp]	7.74	0.9926
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	7.74	0.9958
					Potri.005G130750 [exp]	8.24	0.9956
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G091700 [exp]	8.66	0.9955	CHI3.4
					Potri.007G117900 [exp]	8.77	0.9950
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	12.00	0.9951

Compare expression of checked genes

Potri.013G100600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.