Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24340 133 / 5e-36 Phosphorylase superfamily protein (.1) AT4G24350 129 / 7e-35 Phosphorylase superfamily protein (.1.2) AT4G28940 117 / 5e-30 Phosphorylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100700 [exp] 483 / 7e-173 AT4G24340 162 / 4e-47 Phosphorylase superfamily protein (.1) Potri.013G100800 [exp] 478 / 3e-171 AT4G24340 158 / 1e-45 Phosphorylase superfamily protein (.1) Potri.013G082700 [exp] 392 / 4e-137 AT4G24340 179 / 1e-53 Phosphorylase superfamily protein (.1) Potri.013G082800 [exp] 386 / 8e-135 AT4G24340 201 / 4e-62 Phosphorylase superfamily protein (.1) Potri.013G081233 [exp] 386 / 8e-135 AT4G24340 201 / 4e-62 Phosphorylase superfamily protein (.1) Potri.013G082066 [exp] 380 / 3e-132 AT4G24340 201 / 6e-62 Phosphorylase superfamily protein (.1) Potri.013G080400 [exp] 350 / 3e-121 AT4G24350 205 / 4e-64 Phosphorylase superfamily protein (.1.2) Potri.013G080300 [exp] 222 / 2e-72 AT4G24350 98 / 1e-24 Phosphorylase superfamily protein (.1.2) Potri.019G050200 [exp] 194 / 2e-59 AT4G24340 159 / 6e-46 Phosphorylase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028834 [exp] 136 / 2e-35 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10034939 [exp] 97 / 1e-22 AT4G28940 359 / 4e-124 Phosphorylase superfamily protein (.1) Lus10023668 [exp] 89 / 1e-19 AT4G28940 371 / 6e-128 Phosphorylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0408 [poplar] [flax] PUP PF01048 [poplar] [flax] PNP_UDP_1 Phosphorylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.013G101000.1 pacid=42811188 polypeptide=Potri.013G101000.1.p locus=Potri.013G101000 ID=Potri.013G101000.1.v4.1 annot-version=v4.1 ATGTCGAGTATCAATTTGGCAGTACTGCTGGTGCTTGGGCTGCTGTTGGTTACGGCACAGCAGTCCATGCAGATGAGTTTGAGAAACCCTACAGCTGAGA TTGAGACAAGCAATTGCAAAATTGCATTCCTTCGCTTAGGCCTTGTTTTTACCTCTGATAACAACGAAAAGGCTCTTCTAGACTCTGGTCTTTATGAGCC TGACAGTGAAAATCCTTCTGTTGACATTGCCGGAAGAAGGTTCCATATTGGAACACTTAACAATAGCCTTATTATATATGTTAAGACCGGGAGTCACTCA GTAAATGTGGCTACAGCTGTGCAAATTCTCTTGCTTAGATTTCGTACTTCCGGAATCATCTTCTTTGGAAGTTCTGGAAGCCTTGATGAGAAGATGTTGG TGCCAGGTGATGTTGCTGTGCCGAAGGCTGTTGCCTTCACAGGAGTTTGGGAATGGAAGAAATTCCGATCGGAGGAAGGTAAACTGGTATTTGGAGATTT CAATTATCCAGAGAATGGAGAGAACCTGTTGGGGACTGTAGAGTATGAGACAATTAACATGTTCTCTCCAAATGAAGCACCCAAGAAAGTTTTCTGGCTT CCCATCACCACATCCTGGTATAATGCTGCCACTAAAGCGCTCAAGGATTTGAAGTTAAGACAATGCTATTCTGATGAATGCCTGCCCGGAAAACCCAAAG TTGTCTTTGGATCGAAGGGTTCTACTTCTGATTTTTACGTTCGAAATAAAGCATACGGAGACTTCCTTAACGATAATTTTAATGCAACAACTGCCGATAC AGCAAGTGCTTCTGTAGCTTTGACATCTTTGTCAAATGAAAAGCTCTTCGTGGTGTTCGAAGGTGTTTCAAATGTAGCTGGTAAAACAAGTTCAGACTCA GGAGTTAGCTACTTAGCCTCCTACAACGCCTTCCTTGCTGCCACCAAGTTCATTAATTCAATTCCTACGCCACGACTTGCTTGTGAGTGA
AA sequence Show only first row Show all	>Potri.013G101000.1 pacid=42811188 polypeptide=Potri.013G101000.1.p locus=Potri.013G101000 ID=Potri.013G101000.1.v4.1 annot-version=v4.1 MSSINLAVLLVLGLLLVTAQQSMQMSLRNPTAEIETSNCKIAFLRLGLVFTSDNNEKALLDSGLYEPDSENPSVDIAGRRFHIGTLNNSLIIYVKTGSHS VNVATAVQILLLRFRTSGIIFFGSSGSLDEKMLVPGDVAVPKAVAFTGVWEWKKFRSEEGKLVFGDFNYPENGENLLGTVEYETINMFSPNEAPKKVFWL PITTSWYNAATKALKDLKLRQCYSDECLPGKPKVVFGSKGSTSDFYVRNKAYGDFLNDNFNATTADTASASVALTSLSNEKLFVVFEGVSNVAGKTSSDS GVSYLASYNAFLAATKFINSIPTPRLACE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24340			Phosphorylase superfamily prot...		Potri.013G101000 [exp]	0	1
					Potri.008G224228 [exp]	3.74	0.9399
					Potri.008G224246 [exp]	7.14	0.9358
					Potri.010G212850 [exp]	8.94	0.9292
					Potri.004G063101 [exp]	10.90	0.9223
AT5G56320		ATHEXPALPHA1.5,...	EXPANSIN 14, expansin A14 (.1)		Potri.003G223501 [exp]	11.66	0.9223
					Potri.005G026425 [exp]	15.16	0.9159
AT5G41761			unknown protein		Potri.001G364550 [exp]	17.14	0.8925
AT2G32235			unknown protein		Potri.004G028100 [exp]	17.74	0.8911
					Potri.008G136566 [exp]	19.59	0.8878
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.010G212800 [exp]	20.39	0.8944

Compare expression of checked genes

Potri.013G101000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.