Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24160 71 / 8e-13 unknown protein AT3G26050 69 / 3e-12 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70100 67 / 1e-11 unknown protein AT3G27350 64 / 5e-11 unknown protein AT1G70950 64 / 2e-10 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G40700 60 / 6e-10 unknown protein AT1G23060 60 / 2e-09 unknown protein AT3G01710 55 / 9e-08 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075700 [exp] 720 / 0 AT5G40700 74 / 1e-14 unknown protein Potri.008G180900 [exp] 80 / 2e-15 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 79 / 2e-15 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.001G336300 [exp] 76 / 3e-14 AT3G27350 124 / 1e-31 unknown protein Potri.008G192800 [exp] 74 / 8e-14 AT1G70100 197 / 6e-57 unknown protein Potri.010G038100 [exp] 72 / 4e-13 AT1G70100 196 / 4e-56 unknown protein Potri.010G113000 [exp] 69 / 4e-12 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 62 / 5e-10 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002952 [exp] 106 / 2e-25 AT1G24160 77 / 1e-15 unknown protein Lus10003514 [exp] 107 / 8e-25 AT1G24160 76 / 2e-14 unknown protein Lus10029213 [exp] 79 / 3e-16 AT1G24160 135 / 2e-36 unknown protein Lus10010725 [exp] 79 / 3e-15 AT1G70100 213 / 2e-62 unknown protein Lus10037054 [exp] 75 / 6e-14 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10032115 [exp] 63 / 3e-10 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10014571 [exp] 61 / 1e-09 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G101300.6 pacid=42812106 polypeptide=Potri.013G101300.6.p locus=Potri.013G101300 ID=Potri.013G101300.6.v4.1 annot-version=v4.1 ATGGCCACTGAAACAGACCATCTAGATCACCATCAACATCATCAAACCTATGGAGACAAATGGTCATGCCTACAACTATCATCAGAGAAGGGAGAATCCC AGCAGGATGTATCCATCACTCAAATTCTGGATTGCGGTTCGATATCTTTTGGAAGATACACTGCAGACACACTTGCATGGGAAAAATATTCTGTTTTCTC CCACAACAGATGTCAGGAGGAGTTGGAGAAATTTTTTAAGGCACCAGGATTAGTTGCTCAGAAGAAGGCATACTTTGAGGAATACTATAAAAAAATTAGA GCTATGAAGGGATTGCAAGCAGAGCAAGAAACAACTCAAACTGATTCCTATCAAAATGGACAGGAGATTACTACACAAGAAGAAAATGGTGTTGATACTG AAGCATCAAAAAAGGAAAGTAAACCTAGCAATACTAGTCAGGAAGAAAATGGTGCTGATGTTCACAGATCAAAAGAGGAAAACAAGCCTAGCAATGCCTA TAAAATCCAGATTTTAGATAATCATACCACTGGTAATATTAACCCATCTAGGAGAGGCATTAATGATGGAGTAGAAGAAGAAAGTTACCTTAATGGGAAC AGTGGTGGAGCTAGCAAAGAAGATGAAATAGGGGTATGCTTTTCTGCCAGAATACCAAAATATTCTATGGAAGATGGTTCCTCGTCATGTACTCCATCAG TCAAAAGCAGTTCCAAAACTAGACAGAAAGGGAGCCCAGTCAGCAATGAAAACAAGAACAATGGAAGCAAACTGAAGAAGCAGGCATCTAGTATGAGGGT CAAGGGGACTGTCGCTTCTGCTGCAAACAGAAAAAAATCGGACTGCAGAATGAGCAAAGATGTGGTTAAGCCATCCGAGAAGCCAAAGCCATCTGTTTGT AAGGAAATTACAAGCACGGCAGATGTTAGTCTTGTTTCAGGCAAAAGAATTACCACCAAGACCGCAAGCAACAAAAAATCTGACCAGGTTCAATCACATA GACAACGTAGGGAAGTACAATCCAGTGCAACAGTACTTCATGCTTCATTAACAAAGGGCAAAATAGTCTCACTGTCTTCTAATATTAGAGGCGGTCCACC TAAAACACATTCAACTCCCAAAAGCTTGTCAGACAGGCTCCCAGGAACATCATCAGTTCTCACTCGATCTGTTCAGAGAAGTTCGAAAGAGATGACCACC ATTAGTCATTTGAGAAAATTCAGTGTAGATAACAGGAGCTGTGATGGATTTGGTCAGAGGTCTTTAGGGTTGAGTGGCCACCATAGTCTTCCAGAGAGTA GAGAATCTGAGAGCCAGAGACCAAAAGTCGTGTTAAAAACTCTTCCTGACCGGGATAAATCAAATCAGAACACTGGACCTGAGCGTAGGCCCGTCAGTTC TGTCAAAGGACGGAGACAGAAAAAGGGATTAGATGAAATCGATGCCAGAATTGGACCAAAATCTGACTCATCCAAGGGGACGGGCAGTCAGAGGACCTCA AATCTAAAGCCCGTGCATAAGATTGTTACATCTCAGTCTGTATACCTGACACGTCAAAAGGATTCAAGACACATTGATGCACGCATGCATGGATTATTAT CTCATGACAATTGTGTTCTGTTTTCTGTGGCTTGGACTAATACAATGCCATCACGCACAGACAGAGGATGCCGATTTGGCTTTGAGAGTTTAGCAGGTAG AGGGAATTGA
AA sequence Show only first row Show all	>Potri.013G101300.6 pacid=42812106 polypeptide=Potri.013G101300.6.p locus=Potri.013G101300 ID=Potri.013G101300.6.v4.1 annot-version=v4.1 MATETDHLDHHQHHQTYGDKWSCLQLSSEKGESQQDVSITQILDCGSISFGRYTADTLAWEKYSVFSHNRCQEELEKFFKAPGLVAQKKAYFEEYYKKIR AMKGLQAEQETTQTDSYQNGQEITTQEENGVDTEASKKESKPSNTSQEENGADVHRSKEENKPSNAYKIQILDNHTTGNINPSRRGINDGVEEESYLNGN SGGASKEDEIGVCFSARIPKYSMEDGSSSCTPSVKSSSKTRQKGSPVSNENKNNGSKLKKQASSMRVKGTVASAANRKKSDCRMSKDVVKPSEKPKPSVC KEITSTADVSLVSGKRITTKTASNKKSDQVQSHRQRREVQSSATVLHASLTKGKIVSLSSNIRGGPPKTHSTPKSLSDRLPGTSSVLTRSVQRSSKEMTT ISHLRKFSVDNRSCDGFGQRSLGLSGHHSLPESRESESQRPKVVLKTLPDRDKSNQNTGPERRPVSSVKGRRQKKGLDEIDARIGPKSDSSKGTGSQRTS NLKPVHKIVTSQSVYLTRQKDSRHIDARMHGLLSHDNCVLFSVAWTNTMPSRTDRGCRFGFESLAGRGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24160			unknown protein		Potri.013G101300 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	4.00	0.8035
AT4G32060			calcium-binding EF hand family...		Potri.018G118116 [exp]	4.47	0.8093
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	9.89	0.8592
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	13.92	0.8400	Pt-KT2.2
AT1G10850			Leucine-rich repeat protein ki...		Potri.008G144900 [exp]	21.49	0.7984
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.006G002900 [exp]	21.56	0.8334
AT3G01810			unknown protein		Potri.001G333200 [exp]	26.38	0.8284
AT3G03980			NAD(P)-binding Rossmann-fold s...		Potri.019G033600 [exp]	26.92	0.7461
AT4G30993			Calcineurin-like metallo-phosp...		Potri.006G187500 [exp]	34.20	0.8095
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.014G019100 [exp]	36.93	0.7885

Compare expression of checked genes

Potri.013G101300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.