Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22800 516 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G101900 [exp] 376 / 3e-132 AT1G22800 311 / 9e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G088500 [exp] 44 / 8e-05 AT1G69523 315 / 4e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033838 [exp] 530 / 0 AT1G22800 510 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018987 [exp] 530 / 0 AT1G22800 500 / 5e-179 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.013G101700.2 pacid=42812601 polypeptide=Potri.013G101700.2.p locus=Potri.013G101700 ID=Potri.013G101700.2.v4.1 annot-version=v4.1 ATGAGAGGCACCCTGTCTCTGTGTCAGAGGAGTTCACAATTGCTACTTAGAGGAAGAAGAAGAGCAACGAAAGAGACCTACACTCTCATCCCCTCAGTTT CTTATTGCACAAACATTGACAATAACACCATCGATGGGCCACAAAGTCCAAGGGTCAAGATTTTCGATCGGGAACTCAAACGAAAACAGCGTGACCGAGC TGCGTGGTTGATGAGGCCAAGTGATCCTTTTGTGGATGCTGTTGCTGACAATTTGTTGGATCGCTTGGAGGATTGCAAGAAAACATTTCCTACCGCGCTG TGTTTAGGAGGTTCTTCGGAAGCTGTCAGACGTTTGCTACATGGTCGTGGCTCCATTGAAAAGCTTGTCATGATGGACACTTCAAATGACATGGTTCAAT TATGTAAGGATGCTGAAGCTGCTCAACAAGATTCAAATCAGAATATCGAAACATCCTTTGTGGTGGGAGATGAGGAGTTTCTACCTATAAAAGAAAGTTC GGTAGATTTGGTTATCAGTTGCTTGGGACTCCATTGGACAAATGATCTTCCAGGAGCCATGATACAGTGTAAACTAGCATTGAAGCCGGATGGCCTATTT TTAGCAGCAATTTTGGGTGGAGAAACCTTGAAGGAGCTGAGAATAGCATGCACTGTGGCTCAAATGGAGCGTGAAGGAGGCATTAGTCCTCGCATATCAC CTCTGGCACAAGTCCGTGATGCAGGGAATCTTTTGACTAGGGCAGGCTTCACCCTTCCTGGAGTTGATGTTGATGAATACGTGGTTAGGTATAGCAATGC TCTGGAGCTGATAGAGCATTTGCGCGCAATGGGCGAAACTAATGCTCTTCTGCAAAGGAACAATGTTCTAAAGAGAGAAACAGCCCTTGCTACTGCAGCA ATTTATGATTCAATGTTTGCTGCAGAAGATGGCACCATTCCCGCAACATTCCAGGTTATATTCATGACGGGGTGGAGGGAGCACCCATCTCAGCAGAAGG CCAAAAGGAGGGGGTCTGCTACCATATCATTCGATGACATCCAAAAGCAATTTAGCAGTGATAATTGA
AA sequence Show only first row Show all	>Potri.013G101700.2 pacid=42812601 polypeptide=Potri.013G101700.2.p locus=Potri.013G101700 ID=Potri.013G101700.2.v4.1 annot-version=v4.1 MRGTLSLCQRSSQLLLRGRRRATKETYTLIPSVSYCTNIDNNTIDGPQSPRVKIFDRELKRKQRDRAAWLMRPSDPFVDAVADNLLDRLEDCKKTFPTAL CLGGSSEAVRRLLHGRGSIEKLVMMDTSNDMVQLCKDAEAAQQDSNQNIETSFVVGDEEFLPIKESSVDLVISCLGLHWTNDLPGAMIQCKLALKPDGLF LAAILGGETLKELRIACTVAQMEREGGISPRISPLAQVRDAGNLLTRAGFTLPGVDVDEYVVRYSNALELIEHLRAMGETNALLQRNNVLKRETALATAA IYDSMFAAEDGTIPATFQVIFMTGWREHPSQQKAKRRGSATISFDDIQKQFSSDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22800			S-adenosyl-L-methionine-depend...		Potri.013G101700 [exp]	0	1
AT3G01510		LSF1	like SEX4 1 (.1)		Potri.001G349000 [exp]	4.47	0.8678
AT2G13840			Polymerase/histidinol phosphat...		Potri.001G206400 [exp]	5.29	0.8734
AT2G28605			Photosystem II reaction center...		Potri.007G100800 [exp]	21.90	0.8642
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Potri.003G222800 [exp]	34.69	0.8481
AT5G64460			Phosphoglycerate mutase family...		Potri.009G080300 [exp]	38.45	0.8556
AT1G78010			tRNA modification GTPase, puta...		Potri.002G092600 [exp]	52.24	0.8596
AT1G76050			Pseudouridine synthase family ...		Potri.002G016800 [exp]	52.66	0.8397
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	75.31	0.8229
AT5G42770			Maf-like protein (.1.2)		Potri.014G196400 [exp]	79.20	0.8334
AT5G63010			Transducin/WD40 repeat-like su...		Potri.014G000900 [exp]	84.89	0.8172

Compare expression of checked genes

Potri.013G101700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.