Plant FIBer expression Database

Potri.013G101801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G101801.1 pacid=42811016 polypeptide=Potri.013G101801.1.p locus=Potri.013G101801 ID=Potri.013G101801.1.v4.1 annot-version=v4.1
ATGCAACTAATTACTTCGGATGCCTCTTTTTCATCCAATGATTTTTTGAAAAAATCAAACATATGCTCTGTCCAGTTGTATTCCGCAATGCTATTCATGT
CTTCAACATATTCCAAGTATGCAAATGGGAGATTGCTTCCATTGTTTGACAGGAAAAGGGACACAAGAATTTTCAGGACCAAAACTCTGCACATGTCTCG
AACATTTTCATTGGTGTTCAAAAAGTTGTGGAGCTGTTGGAAGAAGAAATGTGGCGCAAGCTTTTTTTCTGCTGAACATGAGGATAAGAAGAAAAAAGAG
ATAAGAGAGTTGAAATGTGAAAATCAGAAATTAAAAGATCAACTCAAAAAGACTGAAGAAAAGGTCAAGATATTTGAAAAGAAAAAGGATTTCCAAAATG
CAAAAATTAAAAAGCTACGATGA
AA sequence
>Potri.013G101801.1 pacid=42811016 polypeptide=Potri.013G101801.1.p locus=Potri.013G101801 ID=Potri.013G101801.1.v4.1 annot-version=v4.1
MQLITSDASFSSNDFLKKSNICSVQLYSAMLFMSSTYSKYANGRLLPLFDRKRDTRIFRTKTLHMSRTFSLVFKKLWSCWKKKCGASFFSAEHEDKKKKE
IRELKCENQKLKDQLKKTEEKVKIFEKKKDFQNAKIKKLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G101801
[exp]
0 1
AT2G38750 ANNAT4 annexin 4 (.1) Potri.001G024900
[exp]
1.73 0.8880 ANNAT4.1
AT5G40010 ASD, AATP1 ATPase-in-Seed-Development, AA... Potri.015G067400
[exp]
3.00 0.7748
AT2G30070 ATKUP1, ATKT1P,... POTASSIUM UPTAKE TRANSPORTER 1... Potri.005G095900
[exp]
13.41 0.8550
AT5G36890 BGLU42 beta glucosidase 42 (.1.2) Potri.010G178800
[exp]
32.32 0.8126
AT4G04640 ATPC1 ATPase, F1 complex, gamma subu... Potri.011G024700
[exp]
34.05 0.7320 ATPC1.2
AT4G13440 Calcium-binding EF-hand family... Potri.019G029100
[exp]
39.34 0.8078
Potri.001G203700
[exp]
45.25 0.7807
AT1G07300 josephin protein-related (.1) Potri.001G249500
[exp]
58.17 0.7653
Potri.012G073800
[exp]
61.99 0.7204
AT2G38760 ANN3, ANNAT3 annexin 3 (.1) Potri.001G024800
[exp]
64.50 0.7568 ANNAT3.1

Potri.013G101801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.