Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10000 434 / 2e-153 Thioredoxin family protein (.1.2) AT5G03880 197 / 2e-60 Thioredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213000 [exp] 180 / 8e-54 AT5G03880 455 / 8e-162 Thioredoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001283 [exp] 418 / 1e-146 AT4G10000 395 / 5e-138 Thioredoxin family protein (.1.2) Lus10021357 [exp] 154 / 3e-43 AT5G03880 426 / 2e-149 Thioredoxin family protein (.1) Lus10017034 [exp] 142 / 1e-38 AT5G03880 402 / 4e-140 Thioredoxin family protein (.1) Lus10009466 [exp] 62 / 2e-11 AT4G10000 71 / 3e-15 Thioredoxin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G102000.1 pacid=42811574 polypeptide=Potri.013G102000.1.p locus=Potri.013G102000 ID=Potri.013G102000.1.v4.1 annot-version=v4.1 ATGTCCTTGTTATCTCCAAAATCCTCTCCTTTCTCCCTCCATCCCTCCACCACTTCACCCGCCCCAAACAATAGTTTTTCTTTCCCACTCACTTCAATTC CAGTTTCCACACTAAACCACAAACACCCACTTAAATTCTTCAGCAATAGGAACTGGGTTTCTCTCAGAAAAAGATTTCATGTCAAATCTCCTGATTCTGA TACAACTGAAAGTGTCTCAGCTTCAAGTGATGGCTCATCATCATCATCATCAAGTACAAATAGTTTCTTGTCTTTTCTTTGCCCTCTTCTCAAGCTCTTT TCTGGAGGTGATCCTTCTCAAGAACGGAATTATACTTTAGAGGTAGCAACGTCTTCCTTGTCTACCTTGGCACGACTTCCATGGGGATCAAGATCGTTAT CAGAGAATTTGAACAACCAAGAGACAACCATTTCAGATCCTCCTAAACCTTTGCAACTGTATGAATTTGAAGCATGCCCCTTTTGCAGGAGGGTCCGAGA GGCAATGACTGAGCTGGATCTTTCCACAGAGGTATATCCTTGTCCTAAAGGCTCTGTAAGGCATAGGGAAATAGTCAGAAAAATTGGTGGTAAAGAGCAG TTTCCTTTTCTTGTTGACCCAAACACTGGTGTTTCAATTTATGAAAGTGGTGACATTGTGAAATACCTATTTCAGCAATATGGTAAAGGTAGAAGTCCCT CAATGGGTCTTTTGGAAAGCACATTGTTTACAGGATGGATGCCAACAATTCTTCGAGCAGGTAGAGGAATGACCTTGTGGGAAAAGGCCAGACTAGATCC ACCATCCAAGAAGCTGGAACTTTTCTCATTCGAGAACAATCCGTATGCAAGACTTGTGCGTGAGGCACTATGTGAATTGGAGCTTCCGTATATCCTTCAA AATGTCGGGACAGGGTCTCAGCGAACAAAGTTACTAGTTGATGCATCTGGATTCCAAGAGGTGCCATACTTGATTGACCCAAACACTGGTGCGGAAATCG GTGACTATAAGAAGATACTGGCTTATTTGTTCCAAACATATTCAGCAGCAGCAACATAG
AA sequence Show only first row Show all	>Potri.013G102000.1 pacid=42811574 polypeptide=Potri.013G102000.1.p locus=Potri.013G102000 ID=Potri.013G102000.1.v4.1 annot-version=v4.1 MSLLSPKSSPFSLHPSTTSPAPNNSFSFPLTSIPVSTLNHKHPLKFFSNRNWVSLRKRFHVKSPDSDTTESVSASSDGSSSSSSSTNSFLSFLCPLLKLF SGGDPSQERNYTLEVATSSLSTLARLPWGSRSLSENLNNQETTISDPPKPLQLYEFEACPFCRRVREAMTELDLSTEVYPCPKGSVRHREIVRKIGGKEQ FPFLVDPNTGVSIYESGDIVKYLFQQYGKGRSPSMGLLESTLFTGWMPTILRAGRGMTLWEKARLDPPSKKLELFSFENNPYARLVREALCELELPYILQ NVGTGSQRTKLLVDASGFQEVPYLIDPNTGAEIGDYKKILAYLFQTYSAAAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10000			Thioredoxin family protein (.1...		Potri.013G102000 [exp]	0	1
AT4G27700			Rhodanese/Cell cycle control p...		Potri.015G008000 [exp]	3.16	0.9724
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.016G068300 [exp]	3.16	0.9782	CP33.2
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	3.46	0.9715
					Potri.010G145700 [exp]	6.00	0.9645
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	6.70	0.9683
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.001G301000 [exp]	8.71	0.9707	NHD1.2
AT4G27700			Rhodanese/Cell cycle control p...		Potri.012G020700 [exp]	10.90	0.9655
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	10.95	0.9550
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	10.95	0.9632
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Potri.006G216200 [exp]	11.95	0.9614

Compare expression of checked genes

Potri.013G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.