Plant FIBer expression Database

Potri.013G102100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52960 279 / 9e-96 Thioredoxin superfamily protein (.1)
AT1G65980 195 / 1e-63 TPX1 thioredoxin-dependent peroxidase 1 (.1.2)
AT1G60740 189 / 3e-61 Thioredoxin superfamily protein (.1)
AT1G65970 188 / 5e-61 TPX2 thioredoxin-dependent peroxidase 2 (.1)
AT1G65990 143 / 6e-40 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1)
AT3G06050 116 / 2e-32 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G083500
[exp]
189 / 3e-61 AT1G65980 280 / 4e-98 thioredoxin-dependent peroxidase 1 (.1.2)
Potri.001G423500
[exp]
188 / 5e-61 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2)
Potri.019G024000
[exp]
105 / 3e-28 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002843
[exp]
318 / 3e-111 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1)
Lus10003373
[exp]
317 / 1e-110 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1)
Lus10023662
[exp]
179 / 3e-57 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2)
Lus10023180
[exp]
176 / 2e-56 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2)
Lus10015077
[exp]
175 / 9e-56 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2)
Lus10021932
[exp]
113 / 1e-30 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1)
Lus10041218
[exp]
92 / 1e-21 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1)
Lus10017112
[exp]
40 / 0.0006 AT1G48130 335 / 3e-118 1-cysteine peroxiredoxin 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF00578 AhpC-TSA AhpC/TSA family
Representative CDS sequence
>Potri.013G102100.1 pacid=42811011 polypeptide=Potri.013G102100.1.p locus=Potri.013G102100 ID=Potri.013G102100.1.v4.1 annot-version=v4.1
ATGGCCGCCTCGTTCTCGATTTCCAGACTCATCCTCTCCTCTCCAACCCAAATATCCACCACCGCCGCCACCGCCAAATCTTTCCTCTCATCTCTCCCCC
TCAAACCCAACCGCCTACCCAAGCCCCTGAGAACCACCACCAGAAAATTCTCCACTATCTCCGCCACCATTTCTGTCGGGGACAAACTCCCAGAAGCCAC
CCTCTCCTACTTTGACTCCGAAGGAGAGCTCCAAACCACCACAATCTCCTCCCTAACATCCGGGAAAAAATCAATCCTTTTCGCTGTCCCGGGCGCCTTC
ACCCCAACATGCTCCCAGAAACACCTTCCAGGTTTCGTGGAGAAATCGGCAGAGCTAAAGTCAAAAGGGGTAGACACAATCGCGTGTATATCAGTGAACG
ACGCGTTTGTGATGAAAGCATGGAAGGAGGATTTGGGGATAAAAGATGATGGAGTGCTGCTTTTGTCTGATGGGAATGGGGATTTTACAAAGGCAATAGG
GTGTGAGTTGGATTTGAGTGACAAGCCAGTTGGGCTAGGAGTGAGGTCAAGGAGGTATGCGTTGTTGGCTGAAGATGGGGTTGTCAAGGTTCTTAATTTG
GAGGAAGGTGGAGCTTTTACTTCCAGTGGAGCTGAGGATATGCTCAAGGCTCTCTGA
AA sequence
>Potri.013G102100.1 pacid=42811011 polypeptide=Potri.013G102100.1.p locus=Potri.013G102100 ID=Potri.013G102100.1.v4.1 annot-version=v4.1
MAASFSISRLILSSPTQISTTAATAKSFLSSLPLKPNRLPKPLRTTTRKFSTISATISVGDKLPEATLSYFDSEGELQTTTISSLTSGKKSILFAVPGAF
TPTCSQKHLPGFVEKSAELKSKGVDTIACISVNDAFVMKAWKEDLGIKDDGVLLLSDGNGDFTKAIGCELDLSDKPVGLGVRSRRYALLAEDGVVKVLNL
EEGGAFTSSGAEDMLKAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52960 Thioredoxin superfamily protei... Potri.013G102100
[exp]
0 1
AT1G54500 Rubredoxin-like superfamily pr... Potri.013G035700
[exp]
12.60 0.9354
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Potri.014G153000
[exp]
19.44 0.9332
AT3G12345 unknown protein Potri.008G047800
[exp]
22.78 0.9318
AT3G04790 EMB3119 EMBRYO DEFECTIVE 3119, Ribose ... Potri.005G052000
[exp]
22.80 0.9256
AT3G25810 Terpenoid cyclases/Protein pre... Potri.017G041700
[exp]
28.39 0.9231
AT1G74970 TWN3, RPS9 ribosomal protein S9 (.1) Potri.002G132200
[exp]
31.30 0.9308 Pt-RPS9.2
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Potri.010G127300
[exp]
33.39 0.9285
AT1G14345 NAD(P)-linked oxidoreductase s... Potri.010G093300
[exp]
35.58 0.9281
AT2G47450 CPSRP43, CAO CHLOROPLAST SIGNAL RECOGNITION... Potri.009G140500
[exp]
38.41 0.9236 Pt-CAO.3
AT4G21860 MSRB2 methionine sulfoxide reductase... Potri.001G286500
[exp]
38.98 0.9253

Potri.013G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.