Plant FIBer expression Database

Potri.013G102300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G09970 95 / 5e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0187 LysM PF01476 LysM LysM domain
Representative CDS sequence
>Potri.013G102300.4 pacid=42812041 polypeptide=Potri.013G102300.4.p locus=Potri.013G102300 ID=Potri.013G102300.4.v4.1 annot-version=v4.1
ATGGAAGTGAAGCTTAGCCATAGACGATTCTCTGATCTTTCTCTTCCCAGATTCCATTTTCCAAATCCTAAAACTACCTTCCCATCTCAAAGTTTGAAAT
GGTGGGTTAACAGTAAGAAGCATTTTACCGTTCTTGCAGAGAGATGGAGATTTCATATTCAGGATATTTCAAAGGGTCAAAGCTCCACCAATCCCTACTT
GCTTCATGTGGTCAAAGAGGGTGAAACATTAACTTCAATTTCCAAGCAGTATGGGGTGTCTATATATTCTGTTGCTGCAGCTAATAAGAATATATTGGAT
GTTGATCTTGTTTTCGAAGGACAGCTTCTTAACATTCCTGCAGCTGCCCCTGCAGGCACTCAAGTGTATCAGATCAAGAAATGTGAATCGCCTAGCTTTG
ATCAACTGGAAAGGCTTCAGAACTTTATGAAGATTATGGATGGGGTTCTAAACCAAAAGCCCTTCATCACAGTAACCACCCTCCGTTTGCCACATGCTAA
AGCCACTGGTTATTTTCTAGTTCTGGTTCCTGCATTAGCATTTTGCATCAGATGCATAATTGGTGCCTTTCACACTAGAGCTCGTAGAAACTTGGGATGC
CAAGCTTCGAATGAATCAAGGAGGCATCATGATGTGCCCGAGAGTAAGCGTTGGAAACATGCTCTCAGTGACATAAGGGAGCCAGATAATTTGGATGGTG
AACCAATACTAAATTCCACTGGTACTTCTGCAGATCAAGATCAAAATTCATTTGAAGAAGTCTCTCATGCATACGACAAACTTGAACATGAATATCAGAA
GTTTTTATCAGAATGTGGAATTAGCAACTCGGGATACTGGCGGGGAGGTTCTACCGGCTAA
AA sequence
>Potri.013G102300.4 pacid=42812041 polypeptide=Potri.013G102300.4.p locus=Potri.013G102300 ID=Potri.013G102300.4.v4.1 annot-version=v4.1
MEVKLSHRRFSDLSLPRFHFPNPKTTFPSQSLKWWVNSKKHFTVLAERWRFHIQDISKGQSSTNPYLLHVVKEGETLTSISKQYGVSIYSVAAANKNILD
VDLVFEGQLLNIPAAAPAGTQVYQIKKCESPSFDQLERLQNFMKIMDGVLNQKPFITVTTLRLPHAKATGYFLVLVPALAFCIRCIIGAFHTRARRNLGC
QASNESRRHHDVPESKRWKHALSDIREPDNLDGEPILNSTGTSADQDQNSFEEVSHAYDKLEHEYQKFLSECGISNSGYWRGGSTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G09970 unknown protein Potri.013G102300
[exp]
0 1
AT5G04690 Ankyrin repeat family protein ... Potri.015G119401
[exp]
1.41 0.8411
AT5G64860 DPE1 disproportionating enzyme (.1) Potri.007G081400
[exp]
2.44 0.8174 DPE1.1
AT4G28365 AtENODL3 early nodulin-like protein 3 (... Potri.001G398800
[exp]
5.29 0.7721
AT5G67360 ARA12 Subtilase family protein (.1) Potri.014G018900
[exp]
7.74 0.7739
AT5G03450 Transducin/WD40 repeat-like su... Potri.006G122800
[exp]
7.74 0.7568
AT5G57970 DNA glycosylase superfamily pr... Potri.018G106900
[exp]
8.12 0.7575
AT1G26100 Cytochrome b561/ferric reducta... Potri.010G131100
[exp]
8.36 0.8236
AT5G36930 Disease resistance protein (TI... Potri.005G206400
[exp]
9.53 0.7541
AT4G23980 ARF ARF9 auxin response factor 9 (.1.2) Potri.014G100100
[exp]
11.48 0.7345
AT4G14723 EPFL4, CLL2 epidermal patterning factor li... Potri.010G082200
[exp]
14.31 0.7835

Potri.013G102300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.