Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33811 534 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 360 / 2e-123 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 352 / 3e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 346 / 5e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 336 / 5e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 322 / 4e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 309 / 3e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 302 / 1e-100 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 283 / 6e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 265 / 2e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076500 [exp] 370 / 3e-127 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 364 / 7e-125 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 318 / 5e-107 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 318 / 5e-107 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076400 [exp] 318 / 9e-107 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 316 / 3e-106 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 314 / 2e-105 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008906 [exp] 311 / 2e-104 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 311 / 2e-104 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000893 [exp] 528 / 0 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 369 / 1e-126 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 360 / 5e-123 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 353 / 2e-120 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 350 / 3e-119 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 345 / 3e-117 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 335 / 3e-113 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 320 / 4e-107 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011999 [exp] 291 / 3e-96 AT5G45670 328 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002774 [exp] 290 / 1e-95 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.013G102400.1 pacid=42811531 polypeptide=Potri.013G102400.1.p locus=Potri.013G102400 ID=Potri.013G102400.1.v4.1 annot-version=v4.1 ATGAGGAGTTTCAGTACAGATTTGGTTTTGTCAGTCACTTTAATATTAGTGTTGTTAGCCACTCGAGCTTGTGCACAGCCACAGCAAGGCCAAGTACCTT GTTTTTTCATTTTTGGGGACTCATTGGTAGATAATGGAAACAACAACAGGTTGCTTACACTTTCTAGGGCCAATTACAGGCCTTATGGCATTGATTTTCC GCAGGGTGTCACTGGTCGATTTACCAATGGTCGAACATATGTCGATGCCTTGGCTCAACTTTTTGGGTTTCGAAATTACATCCCACCCTATGCGAGAACC AGGGGCCCAGCGCTATTAAGGGGAGTGAATTATGCATCTGGAGCGGCTGGCATCAGAGATGAAACTGGAAACAATCTGGGGGGTCACACCTCAATGAACC AGCAAGTAGCCAACTTTGGCATGACAGTGGAACAAATGAGGAGATATTTCAGAGGAGATAACAATGCACTCACTAGCTATTTAAGCAAATGCATCTTCTA TTCTGGGATGGGAAGTAATGATTATCTCAACAACTATTTCATGTCCGACTTCTACTCAACTAGCCATGATTTCACTTCAAAAGCTTTTGCGGCTGTACTT CTTCAGGATTACACTCGTCAGTTGACCCAACTATATGCCTTGGGAGCTCGGAAGGTGATTGTAACTGCAATTGGCCAAATTGGCTGCATTCCATATGAGC TCGCCAGGTATAATGGTACCAACAGCCGCTGCAATGAGAAAATCAACAATGCTATTTCTTTATTCAACTCAGGGCTCCTCAAGCTAGTTCAAAATTTCAA CAATGGCCGATTGCCTGGAGCCAAGTTTGTTTACCTCGATTCGTATAAAAGCTCTAATGATCTGTCTCTCAATGGAACCTCCTTTGGATTTGAAGTAATA GACAAGGGATGTTGTGGAGTGGGGAAGAACAATGGGCAGATAACATGTCTTCCTCTTCAACAGATATGCCAGGATCGCAGTAAATACTTATACTGGGATG CCTTTCACCCGACAGAAGTGGCAAACATCTTACTCGCTAAAGTAACATATAATTCACAGACTTACACTTATCCAATGAGTATACAACAATTGACAATGCT ATGA
AA sequence Show only first row Show all	>Potri.013G102400.1 pacid=42811531 polypeptide=Potri.013G102400.1.p locus=Potri.013G102400 ID=Potri.013G102400.1.v4.1 annot-version=v4.1 MRSFSTDLVLSVTLILVLLATRACAQPQQGQVPCFFIFGDSLVDNGNNNRLLTLSRANYRPYGIDFPQGVTGRFTNGRTYVDALAQLFGFRNYIPPYART RGPALLRGVNYASGAAGIRDETGNNLGGHTSMNQQVANFGMTVEQMRRYFRGDNNALTSYLSKCIFYSGMGSNDYLNNYFMSDFYSTSHDFTSKAFAAVL LQDYTRQLTQLYALGARKVIVTAIGQIGCIPYELARYNGTNSRCNEKINNAISLFNSGLLKLVQNFNNGRLPGAKFVYLDSYKSSNDLSLNGTSFGFEVI DKGCCGVGKNNGQITCLPLQQICQDRSKYLYWDAFHPTEVANILLAKVTYNSQTYTYPMSIQQLTML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Potri.013G102400 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128400 [exp]	1.41	0.9999
					Potri.011G073116 [exp]	3.16	0.9999
					Potri.014G075251 [exp]	3.87	0.9999
AT4G33355			Bifunctional inhibitor/lipid-t...		Potri.014G046500 [exp]	4.47	0.9999
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.002G219700 [exp]	4.47	0.9998
					Potri.015G054900 [exp]	6.00	0.9959
AT4G38770		ATPRP4, PRP4	ARABIDOPSIS THALIANA PROLINE-R...		Potri.009G129900 [exp]	6.32	0.9998	PRP4.4
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.006G108000 [exp]	6.48	0.9975
					Potri.007G113350 [exp]	6.92	0.9998
AT1G07650			Leucine-rich repeat transmembr...		Potri.011G073191 [exp]	7.14	0.9924

Compare expression of checked genes

Potri.013G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.