Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71692 250 / 4e-85 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) AT2G03710 140 / 5e-42 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G58780 137 / 4e-40 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G09960 135 / 1e-39 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G69120 135 / 2e-39 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT2G42830 135 / 2e-39 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G18960 134 / 9e-39 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT1G24260 133 / 1e-38 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45660 131 / 4e-38 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT1G26310 131 / 7e-38 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G076800 [exp] 351 / 5e-125 AT1G71692 237 / 9e-80 XAANTAL1, AGAMOUS-like 12 (.1) Potri.003G169600 [exp] 144 / 8e-43 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058400 [exp] 143 / 1e-42 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G064300 [exp] 141 / 7e-42 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 137 / 2e-40 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.011G075800 [exp] 135 / 1e-39 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.019G077200 [exp] 135 / 1e-39 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.017G099700 [exp] 135 / 2e-39 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.004G115500 [exp] 135 / 3e-39 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001277 [exp] 240 / 2e-81 AT1G71692 218 / 8e-73 XAANTAL1, AGAMOUS-like 12 (.1) Lus10009472 [exp] 219 / 3e-73 AT1G71692 204 / 3e-67 XAANTAL1, AGAMOUS-like 12 (.1) Lus10034663 [exp] 140 / 6e-41 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10007983 [exp] 136 / 1e-39 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 136 / 1e-39 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10005080 [exp] 135 / 5e-39 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003124 [exp] 134 / 8e-39 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003125 [exp] 130 / 3e-38 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10017871 [exp] 130 / 4e-38 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10005302 [exp] 132 / 6e-38 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.013G102600.1 pacid=42811295 polypeptide=Potri.013G102600.1.p locus=Potri.013G102600 ID=Potri.013G102600.1.v4.1 annot-version=v4.1 ATGGCTCGCGGAAAGGTTCAGATGAAACGTATTGAGAACTCTGTGCACAGGCAGGTTACCTTCTGCAAGCGCCGATCTGGTCTCCTTAAGAAGGCTAAGG AGCTCTCTGTGCTGTGTGATGCTGAAATTGGAGTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGGCTTAT TGAGAGGTACATGAAGTCCAGCCGAGGGACCCAACCTGAACCAGCTGCCATTGAGACCCAGCCTGATATGGATGTGAAGGAAGAGATCAACATGTTGAAG CAAGAGATTGAAATATTGCAAAAAGGACTGAGGTACATGTTTGGAGGGCGTGCTGCTGAAATGACCTTAGATGAATTGATTGAACTTGAAAAACATCTTG AAATTTGGATTTATCAAATTCGTTCAACCAAGATGGACATCATGTTTAAAGAGATTCAACAGCTGAGGAACAAGGAAGGAATATTGAAGGCTGCAAATCA ATATCTTCAAGATAAGGTAGAGGAGAACATTGTGATTACTAACTCTGCACCAATAACCACTAATATTCCGTACCCACTAACTATACAAAATGAAATATTT CAATATTAG
AA sequence Show only first row Show all	>Potri.013G102600.1 pacid=42811295 polypeptide=Potri.013G102600.1.p locus=Potri.013G102600 ID=Potri.013G102600.1.v4.1 annot-version=v4.1 MARGKVQMKRIENSVHRQVTFCKRRSGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMKSSRGTQPEPAAIETQPDMDVKEEINMLK QEIEILQKGLRYMFGGRAAEMTLDELIELEKHLEIWIYQIRSTKMDIMFKEIQQLRNKEGILKAANQYLQDKVEENIVITNSAPITTNIPYPLTIQNEIF QY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.013G102600 [exp]	0	1
AT3G12090		TET6	tetraspanin6 (.1)		Potri.010G220300 [exp]	2.23	0.9213
AT5G04080			unknown protein		Potri.006G043300 [exp]	3.46	0.9133
AT5G45470			Protein of unknown function (D...		Potri.014G030400 [exp]	3.87	0.8743
AT3G60730			Plant invertase/pectin methyle...		Potri.002G145700 [exp]	4.12	0.8428
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.007G105000 [exp]	4.89	0.8673
AT5G50610			unknown protein		Potri.015G099800 [exp]	5.29	0.8682
AT4G21740			unknown protein		Potri.001G371800 [exp]	6.48	0.8511
					Potri.001G058500 [exp]	6.92	0.8463
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	7.54	0.8963
					Potri.017G071050 [exp]	8.88	0.7677

Compare expression of checked genes

Potri.013G102600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.