Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09640 115 / 2e-32 Translation elongation factor EF1B, gamma chain (.1.2) AT1G57720 115 / 4e-32 Translation elongation factor EF1B, gamma chain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077000 [exp] 140 / 2e-41 AT1G57720 303 / 1e-99 Translation elongation factor EF1B, gamma chain (.1.2) Potri.003G004700 [exp] 133 / 5e-39 AT1G57720 596 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Potri.004G226300 [exp] 130 / 1e-37 AT1G57720 323 / 3e-107 Translation elongation factor EF1B, gamma chain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033213 [exp] 134 / 3e-38 AT1G57720 600 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007150 [exp] 130 / 2e-37 AT1G09640 625 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002536 [exp] 129 / 2e-37 AT1G09640 630 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007148 [exp] 129 / 3e-37 AT1G09640 638 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002537 [exp] 129 / 1e-36 AT1G09640 634 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G103100.1 pacid=42812374 polypeptide=Potri.013G103100.1.p locus=Potri.013G103100 ID=Potri.013G103100.1.v4.1 annot-version=v4.1 ATGGACTTGGCTCCTAAGTATGCTTTTGGGAAGATGCTGGCGATTGGCTCAGGACCACCCTTCAAGGTGAAGGGGTCGTGGCTCTTCCGTGGACAAGAGA TTCCCCAGTTTGGGATAGATGAGTGTTATGACATGGAGCTATATGAGTGGAAGAAGGTTGACATCACAGACGAGGAACAGAAGGAGCGAGTGAGTCAGAT GATCGAAGACCATGAGCTTTTGAGGGGGAGCCTCTATTGGATGCCAAATGCTTCAAGTGATTAG
AA sequence Show only first row Show all	>Potri.013G103100.1 pacid=42812374 polypeptide=Potri.013G103100.1.p locus=Potri.013G103100 ID=Potri.013G103100.1.v4.1 annot-version=v4.1 MDLAPKYAFGKMLAIGSGPPFKVKGSWLFRGQEIPQFGIDECYDMELYEWKKVDITDEEQKERVSQMIEDHELLRGSLYWMPNASSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09640			Translation elongation factor ...		Potri.013G103100 [exp]	0	1
AT3G09890			Ankyrin repeat family protein ...		Potri.006G121500 [exp]	3.00	0.8113
					Potri.001G340100 [exp]	5.47	0.8013
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Potri.006G161600 [exp]	8.83	0.7692	Pt-ATRPABC24.1
AT4G25315			Expressed protein (.1.2)		Potri.004G189300 [exp]	10.00	0.7738
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.001G222700 [exp]	12.12	0.7339	FUS12.2
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.012G108600 [exp]	13.49	0.7549
AT2G15000			unknown protein		Potri.009G093400 [exp]	13.85	0.7839
AT3G51010			unknown protein		Potri.007G018300 [exp]	14.49	0.7634
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.003G041501 [exp]	17.37	0.6322
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.003G078700 [exp]	22.80	0.7787	Pt-RPL15.4

Compare expression of checked genes

Potri.013G103100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.