Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47850 649 / 0 CCR4 CRINKLY4 related 4 (.1) AT3G55950 312 / 2e-94 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT3G59420 284 / 3e-83 ACR4 crinkly4 (.1) AT1G67720 251 / 3e-71 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 236 / 5e-66 Leucine-rich repeat protein kinase family protein (.1.2.3) AT5G54380 235 / 5e-66 THE1 THESEUS1, protein kinase family protein (.1) AT1G24030 221 / 6e-65 Protein kinase superfamily protein (.1.2) AT1G79620 233 / 1e-64 Leucine-rich repeat protein kinase family protein (.1) AT4G29180 232 / 1e-64 RHS16 root hair specific 16 (.1.2) AT1G26970 221 / 1e-64 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078300 [exp] 1100 / 0 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.008G068700 [exp] 330 / 4e-101 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 328 / 3e-100 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 325 / 4e-99 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.017G029900 [exp] 285 / 2e-83 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 261 / 7e-75 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.006G090200 [exp] 248 / 4e-72 AT5G02070 783 / 0.0 Protein kinase family protein (.1) Potri.016G084900 [exp] 246 / 2e-69 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 245 / 4e-69 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029170 [exp] 768 / 0 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10012995 [exp] 431 / 7e-147 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10018242 [exp] 311 / 8e-94 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10040663 [exp] 310 / 2e-93 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10028285 [exp] 303 / 6e-91 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10015956 [exp] 275 / 8e-80 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 273 / 2e-79 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10036935 [exp] 253 / 1e-71 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 254 / 5e-71 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 245 / 5e-69 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.013G103300.1 pacid=42811412 polypeptide=Potri.013G103300.1.p locus=Potri.013G103300 ID=Potri.013G103300.1.v4.1 annot-version=v4.1 ATGGCTTGTGATTTGTTTAACCTTCATCTCTTTTCCTACCTCATATTTCTTTCTTCGTTCATTCCATTCGTTTTTTCACTCTCAACCGTGTCAATATCTG AAGTTTCTAACCAAACATTGGTGTGTGCATTAACACCTGCCCGTGATACCAAACAGCACTCTTTTCTAAACTGTTCAAGTTTTCCTGGTGGAATCCAAAT CCCCTCGAATCCTAGTACTTCTTTTTCAGCTATAGTTGGTGGAGAGGGATTCCTCTGTGGTCTAATATCCTTGCCTCGGTCTCCTACTAGTTCAACTTTG GTTTGTTGGAGATTCTTAGTTAATGGTACTAACATGTCCTACAAGAGAGTTTATCATGACCTGGCTCTCAGTCAACTGGAAGCAGGAAAATCTTTTGCCT GTGGCCTAATTAATGTCACTAATCGCCTCGAATGCTGGCCGCGGCGAAAGTTCAACTCTAGCAGTATTGCTCAGGGATTATCAAGTATTGCTGTTGGAGA GGATTTCGTGTGTGGGATATCGGAATCCGGGAGTATTACTTGTGGAGGAAGTATTAATAATGCTTTCGCTTGCCTTAAGGAGAAGTATTGTGCTATTGCT GCCGGGTTTAGGCATGCTTGTGCTATAAATTCCCATCATGGGATAGAGTGCTGGGGAAGTATGGCTGGCGAGAAGCCGGAAGGTGAGTTCATATCAATGG CCTTGGGGGAGAACCGTGGTTGCGCTCTGCGGACTGATGCAACAATAGTTTGTTGGGGGCAAGATAATTTTAGTTTGCCGGAGAGGTTAAAGGAGACTTG TTTTATTGCTATTGAAGCAAAGATAAATGTTTTCTGTGGAGTTGAGAGATCAAATTGGTCCTTGTATTGTTGGGGTAATGAGATTTTCAACTCCAATTTA CTGGTATTTGAGAAAGTGTTGCCAGGCCCCCGTAGAAATGATTGTCCTGATGCTATCTTAGAACGATCTGGCGGATCGTGCCCCCAATGCCAAAATATTT TCCCGCATTCTAAGAGCAATAGCAATTGTACTCCACCTCCGGCCGTACCGCCTCCAACGCCAGAACCCCGTCAAGAGAGGCGAAGGAGGTGTAATAAATG GAGCGACAAAATAATAGCTTTTTTTGTGGTGGGATGTGGTGGATCCCTCGTTCTATTGCTAGTCATTGGATTCTTCCTCTTCAAGTATTGCAAGTGTAGA GGCTGCAGGATCCATGATTCCGGCCGCTTGGATGGTGCCGGGACAGGAGCCCATGTTGAACAGGGTGGTGCTCCAAGCCGACCTCAAGCCCCTCGAACTG AACAAGCATCACCAGTCTTAGAGAAGCGGCTAAGCGAGTTGGCTAGCATGGGAAATGCAGGTCACTTGGAGGTATTCTCTTTCCAAGTTCTACTTAAAGC CACCAACAATTTCTCACGGGATAAAAAAATTGGCACGGGAAGCTTTGGTTCAGTTTATCAGGGCACATTAGATGATGGGTGCGAAGTAGCTATCAAACGA GCTGAAATATCAAACACTTACTCATACTCTGTTGGAACAAGGCGTCAAGAGGACAGGGACGTTGCATTTATCAATGAGCTTGAATCCCTTTCAAGACTTC ATCACAAGAATCTTGTCGAGTTGTTGGGATTCTGCGAAGACAGTAATGAGCTGGTACTAGTCTACGAGTATATGAACAATGGCACCCTCCATGACCATCT CCATAAGCTTGAAAGTTCACCCTTAATGTCATGGACTGCACGCATCAAGGTTGCGCTAGATGCAGCCCGAGGCGTAGAGTACCTTCACAGGTACGCAGTG CCACCAATAATCCACCGAGATATCAAATCATCAAACATATTGCTTGACTCCACGTGGACTGCCAAGGTGTCTGATTTCGGTCTATCTTTGATGGGTCCTG AAGATGAAAAGTCACACCTATCGCTTCTCGCAGCCGGCACGGTGGGTTATATGGACCCAGAATATTATATACTCCAGCAGCTGAGCACGAAGAGCGATGT GTACAGTTTTGGAGTGGTGTTGATGGAGATACTGTCGGGGTACAAGGCTATACACAAGAACGAGAATGGGGTGCATAGGAATGTGGTTGATCTTGTTGTT CCCTACATTGTCCAAGAAGAAATCCATCGAGTTTTAGACTCGAGAGTGCCGCCACCAACACCATTTGAAATAGAGGCAGTGATACGCACAGGGCACTTAG CGGCAGACTGTGTTACACTTGAAGGTCGAGATCGGCCATCCATGACTTATGTTGCAAGTAGCCTAGATAGAGCACTGGCTGCGTGCTTGCCGCACCAATC TTCGCTTTCGCGGTCCACAACCGGGTCTTCGATATGA
AA sequence Show only first row Show all	>Potri.013G103300.1 pacid=42811412 polypeptide=Potri.013G103300.1.p locus=Potri.013G103300 ID=Potri.013G103300.1.v4.1 annot-version=v4.1 MACDLFNLHLFSYLIFLSSFIPFVFSLSTVSISEVSNQTLVCALTPARDTKQHSFLNCSSFPGGIQIPSNPSTSFSAIVGGEGFLCGLISLPRSPTSSTL VCWRFLVNGTNMSYKRVYHDLALSQLEAGKSFACGLINVTNRLECWPRRKFNSSSIAQGLSSIAVGEDFVCGISESGSITCGGSINNAFACLKEKYCAIA AGFRHACAINSHHGIECWGSMAGEKPEGEFISMALGENRGCALRTDATIVCWGQDNFSLPERLKETCFIAIEAKINVFCGVERSNWSLYCWGNEIFNSNL LVFEKVLPGPRRNDCPDAILERSGGSCPQCQNIFPHSKSNSNCTPPPAVPPPTPEPRQERRRRCNKWSDKIIAFFVVGCGGSLVLLLVIGFFLFKYCKCR GCRIHDSGRLDGAGTGAHVEQGGAPSRPQAPRTEQASPVLEKRLSELASMGNAGHLEVFSFQVLLKATNNFSRDKKIGTGSFGSVYQGTLDDGCEVAIKR AEISNTYSYSVGTRRQEDRDVAFINELESLSRLHHKNLVELLGFCEDSNELVLVYEYMNNGTLHDHLHKLESSPLMSWTARIKVALDAARGVEYLHRYAV PPIIHRDIKSSNILLDSTWTAKVSDFGLSLMGPEDEKSHLSLLAAGTVGYMDPEYYILQQLSTKSDVYSFGVVLMEILSGYKAIHKNENGVHRNVVDLVV PYIVQEEIHRVLDSRVPPPTPFEIEAVIRTGHLAADCVTLEGRDRPSMTYVASSLDRALAACLPHQSSLSRSTTGSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Potri.013G103300 [exp]	0	1
					Potri.019G017600 [exp]	1.41	0.9856
					Potri.012G124666 [exp]	3.31	0.9732
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003400 [exp]	3.46	0.9759
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.012G054900 [exp]	4.58	0.9838	CBP60.6
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	6.32	0.9744	Pt-WRKY42.1
AT1G73805		SARD1	SAR Deficient 1, Calmodulin bi...		Potri.015G045300 [exp]	7.07	0.9766
AT5G24110	WRKY	ATWRKY30, WRKY3...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.012G031700 [exp]	8.24	0.9771
					Potri.002G207950 [exp]	8.94	0.9736
					Potri.013G045333 [exp]	12.96	0.9685
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	16.97	0.9731

Compare expression of checked genes

Potri.013G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.