Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08070 476 / 1e-159 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 452 / 4e-151 SLO1 SLOW GROWTH 1 (.1) AT3G15930 442 / 4e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 436 / 5e-144 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 420 / 5e-140 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G12770 421 / 6e-139 MEF22 mitochondrial editing factor 22 (.1) AT4G14820 419 / 1e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G08820 413 / 7e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G05240 404 / 8e-134 MEF19 mitochondrial editing factor 19 (.1) AT2G13600 402 / 2e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071800 [exp] 508 / 3e-172 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 489 / 1e-165 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 491 / 2e-165 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 487 / 6e-164 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 484 / 2e-163 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 466 / 8e-157 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G088600 [exp] 466 / 1e-156 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.012G108000 [exp] 461 / 4e-155 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G044700 [exp] 462 / 4e-154 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 489 / 1e-164 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 484 / 8e-163 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 472 / 1e-158 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004052 [exp] 457 / 6e-154 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033026 [exp] 461 / 2e-153 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 452 / 6e-152 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10010320 [exp] 446 / 1e-149 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030053 [exp] 437 / 1e-144 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 419 / 2e-139 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 412 / 2e-136 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G103600.1 pacid=42811066 polypeptide=Potri.013G103600.1.p locus=Potri.013G103600 ID=Potri.013G103600.1.v4.1 annot-version=v4.1 ATGAGAATTGCAACAACACTGTCACAACCCACCACCACCACTACTATTTACTCAGCTTCGAAAACGCCACAACCCCAGAACAACCCTAATTCTATTTCTT CCCAACAAGAATTATCTCTTCTTTCTAAACTCCATTATTGTAAATCTGTATCACAGCTCAAACAAATCCATGCCTTCATCATCAAAACACCAAGGTCTCA AACTCACCACATTTATGCTAAAAAACTCATCTACTCACTCTTACAACTAAACCATTTCCTTAGCCCCCCAAATGACAAAAACCTTAACTATGCTCACTCT CTTGTTAAGCAATGGGATAAACCTGATGTCTATGCTTACAATGCCTTAATCCAACGCATGTCATCAACTTCTATGCAATCTTTTCACTTGTATCAGGAAA TGCTGATAAAGGGCATTATTCCTGATACGTACACTATCCCCTTTGTTCTTAAGGCATGCTCCCATTCTTTGGCTCTTTGGGAAGGTCAGCAGATTCATGC TCATTGTATTAAAATGTTTTTCATGGAAAATGTGTATGTTAATAACACTCTTATGAGGCTTTATGCTGTCTGCGGAATGCTCGACGTTGTCGAGAAGCTG TTTGAGCAAGGTCCTGTTAGGGACCTGGTCTCGTGGACCGCGCTCATTCAAGCATATCTCAAGATGGGATTTCCAATAGATGCCGTTTCGGCTTTCTTTC GGATGTGCCAAGCAAATTTAAGACCGGACAATATGATTTTAGTTGTTGTTCTTTCCGCGTGCTCCAAGCTGGGAGACTTGAGTTTGGGTAGGAAAATCCA TGAATATATGGTTCACCTTAAGGTGAATGTTGATTCGGATGTTTTCCTTGGCAATGCATTGGTGGACATGTACTTAAAATGTGGGGAAGCTGGTTTTGCT AGGCACATGTTTGATAAGATGCCTGTTAAAAATGTAGTTTCTTGGAATTCAATGATATCTGGTCTAGCTCAGCAAGGACAATTTAAAGAGGCATTGGATG TATTTAGGCGGATGCAAAAGGTGGGATTGAAACCAGATGATGTCACTTTGGTTGCTGTGTTGAATTCTTGTGCAAATCTTGGAATGCTTGATCTTGGAAA GTGGGTTCATGCTTATATAGATAAAAGTCACCTAAGGGCAGATGGGTTTATTGGGAACGCTCTTGTGGATATGTATGCAAAGAGTGGAAGCATCGATCAA GCCTTGAGAGTGTTCCAAGCCATGAAATTAAGAGATGTTTATTCGTATACTGCAATGATTGTAGGCTTGGCAATGCACGGGGAAGTAGAGAGTGCGCTAT CTATCTTCTCTGAAATGCCCAGAACAGGCATAAAACCTGATGAAGTAACATTCGTGGGTGTTCTTTCCGCGTGTAGTCATGCAGGGTTGGTGAAAGAAGG ACGGAGATATTTTGAGGACATGTCCAAGGTCTACAACCTAGAACCTCAAGCAGAGCACTATGGTTGTATGGTTGACCTTTTGGGTCGTGCTGGACTAATA AGTGAGGCACAAGAGTTCATACAGAATATGCCAATTGCTCCTGATGCTTTTGTTTGGGGGGCACTACTAGGAGCTTGCAAGATGCATGCGAAGGTTGAGC TTGGGGAAAGTGTAATGGAAAAACTCCTAGAGGTGGAGCCCCGGAAAGATGGTGCATATACACTCATGTCGAACATGTATTCCTCTGCAAATAGATGGAG AGATGCTTTGAAATGGAGAAAGGCCATGAAAGAAAGAAACATAAAAAAGACTCCAGGGTGTAGTTCAATTGAAGTTGATGGTCTGGTTCATGAATTCCGC AAGGGTGAAAAAGCACATCCAAAAGTTAAAGAGCTATACAAGTTGCTGGAAGCAATGAATGGTCACTTGAGAAACTATGGGAATTTGGTCCACAGCAATG GATTATGTTGA
AA sequence Show only first row Show all	>Potri.013G103600.1 pacid=42811066 polypeptide=Potri.013G103600.1.p locus=Potri.013G103600 ID=Potri.013G103600.1.v4.1 annot-version=v4.1 MRIATTLSQPTTTTTIYSASKTPQPQNNPNSISSQQELSLLSKLHYCKSVSQLKQIHAFIIKTPRSQTHHIYAKKLIYSLLQLNHFLSPPNDKNLNYAHS LVKQWDKPDVYAYNALIQRMSSTSMQSFHLYQEMLIKGIIPDTYTIPFVLKACSHSLALWEGQQIHAHCIKMFFMENVYVNNTLMRLYAVCGMLDVVEKL FEQGPVRDLVSWTALIQAYLKMGFPIDAVSAFFRMCQANLRPDNMILVVVLSACSKLGDLSLGRKIHEYMVHLKVNVDSDVFLGNALVDMYLKCGEAGFA RHMFDKMPVKNVVSWNSMISGLAQQGQFKEALDVFRRMQKVGLKPDDVTLVAVLNSCANLGMLDLGKWVHAYIDKSHLRADGFIGNALVDMYAKSGSIDQ ALRVFQAMKLRDVYSYTAMIVGLAMHGEVESALSIFSEMPRTGIKPDEVTFVGVLSACSHAGLVKEGRRYFEDMSKVYNLEPQAEHYGCMVDLLGRAGLI SEAQEFIQNMPIAPDAFVWGALLGACKMHAKVELGESVMEKLLEVEPRKDGAYTLMSNMYSSANRWRDALKWRKAMKERNIKKTPGCSSIEVDGLVHEFR KGEKAHPKVKELYKLLEAMNGHLRNYGNLVHSNGLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	0	1
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	1.00	0.9570
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	3.74	0.9554
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	5.29	0.9481	NS1.2
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	6.70	0.9405
AT5G17680			disease resistance protein (TI...		Potri.001G307300 [exp]	7.14	0.9276
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	7.34	0.9507
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	8.94	0.9445
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	9.79	0.9526
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	10.24	0.9513
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	14.86	0.9330

Compare expression of checked genes

Potri.013G103600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.